LOCUS       XM_039100489            3204 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus similar to MGC79482 protein
            (RGD1563554), mRNA.
ACCESSION   XM_039100489
VERSION     XM_039100489.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051356.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039100489.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3204
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3204
                     /gene="RGD1563554"
                     /note="similar to MGC79482 protein; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 6
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 3 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:317272"
                     /db_xref="RGD:1563554"
     CDS             173..2695
                     /gene="RGD1563554"
                     /codon_start=1
                     /product="protein PPP4R3C-like"
                     /protein_id="XP_038956417.1"
                     /db_xref="GeneID:317272"
                     /db_xref="RGD:1563554"
                     /translation="MEDKLYRVKVYVMMEDKQWKDIGAGQISSKYIDRLQGVCLLVHS
                     ESDGSPILECKIQPNVPYQKHQGKVIIWSEAKNHGTAIHFQEPNDCQETWEVICQVQG
                     KDPNVEITQLLTDDLESFKDMLLSWNKVEMSSCELHTLENIADLLSFVNEAPSHKKIL
                     TLVLEKEGYIKKLLQLFKTCEKHQNIDGLHYLNNIIRGILFLDNIHLFNIMFSDEFIM
                     DVVGCLEYGPGLDEPKQHRQFLTQNVKFKNVMQITHSQLRKKIQQTYRMQYIYDIVLP
                     TPSIFEVNLLHDLSTMIFFNKIEIITMLQEDEHFLLEVLAQLKDNTVSNERRHELLLF
                     FKEFCAFAKTLHFQKKNTLLKTLIKLGIISALKVVVHMHDYQIQVAALELFAHLVEYS
                     PRLIRAYAMKEAQYSEDNDGLLINIMIKQMTCDSDPEFSRSIILTTVLHAILDPENMR
                     VTTKGHERRKFLNYFYRHCMNKLIEPILSITVENNSDDNRVNICPDNYQNAQLLGAIL
                     EILTFCVQYHSKYVKNYIISKNLLSRILILMSSKHTFLILCAVRFMRKMIGLKDKMYN
                     LYIVEKNLFEPVVNAFMHNGHRYNMLNSAIIELFEFIRQENIKSLIANIVEKFFMFFE
                     SIQYVQTFKGLKTKYEEEKKKKRERQLRKSLHNIIYQRIYCRHIKAMEVKVKADIFCR
                     QITDKEEEREKGGGGGEGGGGRGGEGEGGREGGGREGEGGGGGKGGRGEGGAVLSMGS
                     DIPSHYDMFVKINEMNERENVIECRKRKSSATSEYSTSCGDTSDNGISTVYCSSLVPL
                     VDYAYDTDGEDDDGSYGNNENEEEEEEEEEEEPPKKKPYFHP"
ORIGIN      
        1 agattctgct ggaactaagg caagctcaga gattcaagtg tgcctgagag agaattgtga
       61 ccttgacaac cttcctggcc acggtagtga ggtgtagtta cctgtggtca aaagacaaac
      121 agcccaggtc tgcacaagga cgtggactag tgaggcaaga ccaaagatta agatggaaga
      181 caagctttat agagtaaaag tctatgtcat gatggaagac aagcagtgga aagacatagg
      241 tgcaggacaa atttcatcca aatacattga tcggctccag ggagtatgcc tgcttgttca
      301 ttcagaatca gatggctcac caattctgga gtgcaagata caacctaatg tgccctatca
      361 gaaacatcaa gggaaggtaa tcatttggtc tgaagctaag aaccatggta cggcaataca
      421 tttccaggaa ccaaatgact gtcaagagac ctgggaagtt atctgccaag ttcaaggtaa
      481 agatccaaat gtagaaatca cacaattact tactgatgat ctggaaagtt ttaaagatat
      541 gctgctcagt tggaataaag ttgagatgtc aagctgtgaa ctccatacac ttgaaaacat
      601 tgcagattta ctttcttttg tcaatgaagc accaagccac aaaaaaattc ttacactggt
      661 cttggaaaaa gaaggttaca ttaaaaaatt gctacagctg ttcaaaactt gtgaaaagca
      721 tcagaacata gacggtttac actacttaaa taacatcatt agaggaatcc tgtttctaga
      781 caatatacat ttgtttaaca ttatgttttc tgatgaattt attatggatg tggtaggatg
      841 ccttgaatat ggccctggtt tagatgagcc aaagcagcac aggcaatttt tgactcaaaa
      901 tgtgaaattc aagaatgtta tgcaaataac tcactcccaa cttaggaaaa aaatacaaca
      961 gacctacaga atgcaatata tttatgatat tgtattaccc acaccatcca tatttgaagt
     1021 aaatcttctt catgatctta gcactatgat ttttttcaac aaaattgaaa taattaccat
     1081 gttgcaagaa gatgaacatt ttttgctcga agttcttgct cagctaaaag ataacactgt
     1141 aagcaatgag agacggcatg aattgttatt attcttcaag gaattttgtg catttgctaa
     1201 gacattacac tttcaaaaga aaaatacatt actgaaaaca ctaataaagc taggaatcat
     1261 tagtgctctg aaagttgtag tacacatgca tgattaccaa atacaagtag ctgctttaga
     1321 actatttgca catctagtag aatatagtcc acgtctaatt cgagcatatg caatgaaaga
     1381 agctcagtac agtgaagata atgatggcct tctgattaat ataatgatca aacaaatgac
     1441 ctgtgattct gatcctgaat tttcacgaag catcattttg acaacagttc tccatgcaat
     1501 tcttgatcca gaaaatatgc gtgtcacaac taaggggcat gaaagaagaa aattcctgaa
     1561 ttacttttat agacattgca tgaataaact catagaacca attttgtcta taacagtaga
     1621 aaataatagt gatgacaata gggttaatat ctgtcctgat aattatcaaa atgcacaatt
     1681 acttggtgca attttagaaa tactcacatt ttgtgtgcag taccactcaa aatatgtaaa
     1741 aaattatatt ataagcaaaa acttgctcag cagaatcttg atactgatga gttcaaagca
     1801 cacatttctg attttgtgtg ctgtccggtt tatgagaaaa atgatcggcc ttaaagacaa
     1861 aatgtacaat ctttacatag ttgagaaaaa tctgtttgaa ccagttgtaa atgcttttat
     1921 gcataatgga catcggtaca atatgttaaa ttcagctatt attgagctat ttgaatttat
     1981 aagacaagaa aacatcaagt ctctcattgc aaacattgtg gaaaaatttt ttatgttctt
     2041 tgaatcaatt cagtatgttc agacatttaa agggttgaaa actaaatatg aagaggaaaa
     2101 aaagaagaag agagagagac aattaagaaa gagtttacat aatataatat accagagaat
     2161 atattgtaga catatcaaag ctatggaagt aaaggtcaag gcagatatat tttgtagaca
     2221 gatcacagat aaagaagaag aaagagaaaa aggaggagga ggaggagaag gaggaggagg
     2281 aagaggagga gaaggagaag gaggaagaga aggaggagga cgagaaggag aaggaggagg
     2341 cgggggaaaa ggaggaagag gagaaggagg agctgttcta tcaatgggaa gtgacattcc
     2401 aagtcattat gatatgtttg tgaaaattaa cgagatgaat gaaagagaaa atgtaataga
     2461 atgccgaaaa agaaagtcat ctgcaacctc tgaatattct acgtcttgtg gtgatacgtc
     2521 tgataatgga ataagtacag tttattgtag cagtcttgtt cctttagtgg attacgcata
     2581 tgatactgat ggtgaagatg atgatggttc ttatggtaac aatgaaaatg aagaagaaga
     2641 agaagaagaa gaagaagaag aacccccgaa aaaaaaacct tattttcatc cataaaataa
     2701 tatgaactca aagctcaaat aaaattgtgt agatatcact aactcaaaat atcatttaaa
     2761 aatatttctc ctatggactt ttagttatgg tagaatccag tgcaaaataa taagagacct
     2821 taattttaca taaagaaaac cttccataaa tagatgtgta ttataaaata aacagcaact
     2881 aagttataac ttcttataaa gaacatctta ctttagccac atgtttcgag aagaggaaaa
     2941 attttaataa ataattcaat ttttactaag gtattagaag catctacaaa ggttttattg
     3001 aaaatcctac tgtcaaagaa ggggtctaga aattctttcc ataaattggc atttgtttag
     3061 agtatacttt gatgtattga agacaaaata acatgagact tttcaacatt tctgtgaaga
     3121 tttaccagaa ttttagcatt atgaataata ataggggaac aacattcagt gtaattcagt
     3181 aaaattttca ttaataaagt gata
//
