LOCUS       XM_039090024            1553 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus similar to paired immunoglobin-like
            type 2 receptor beta (RGD1563400), transcript variant X1, mRNA.
ACCESSION   XM_039090024
VERSION     XM_039090024.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051347.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1553
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="12"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1553
                     /gene="RGD1563400"
                     /note="similar to paired immunoglobin-like type 2 receptor
                     beta; Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 ESTs, 1 long SRA read, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 109 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:360777"
                     /db_xref="RGD:1563400"
     CDS             16..675
                     /gene="RGD1563400"
                     /codon_start=1
                     /product="paired immunoglobulin-like type 2 receptor
                     beta-2 isoform X1"
                     /protein_id="XP_038945952.1"
                     /db_xref="GeneID:360777"
                     /db_xref="RGD:1563400"
                     /translation="MKSQDAQGCPLNPCSGFRLSLSFPGNSAGYQKKKDFGVDQPDVL
                     SGVQGGSIEIPFSFYFPWKLAKDPQMSIAWRWKHFHGEFIYNSTRPFLHEHFKGRLIM
                     IWTQGQTSGVLRILNLKDNDQTTYFCRVILQTTEGMNSLQSISGTNLIIHALNTTMGS
                     PSIIPSAVPTAGLEDKRDQRNPSLLSLGAMVGMVLAKVVVIIPLYGWMIFLWWKQRPA
                     A"
ORIGIN      
        1 cacccctccc ttcagatgaa gtctcaggat gctcagggtt gtcctttaaa tccctgcagt
       61 ggcttcagac tctccctgtc cttcccaggg aactcagcag gatatcaaaa aaagaaagac
      121 tttggtgtcg accaaccaga tgtcctctct ggagtccaag gtggctccat cgagatcccc
      181 ttttccttct acttcccctg gaagttggcc aaggatcctc agatgagcat agcctggaga
      241 tggaagcact tccatgggga attcatctat aactccaccc ggcctttcct tcatgagcat
      301 tttaagggcc ggctcatcat gatttggaca cagggtcaga catctggtgt cctcagaatc
      361 ctgaacttga aggacaatga tcagaccaca tacttctgtc gagttattct gcaaacaaca
      421 gaaggcatga attcgttgca gtcaatctct ggcaccaatc tcatcattca tgctctcaat
      481 actaccatgg ggagcccctc tatcatcccc tctgcagtcc ccacagctgg cctggaggac
      541 aaaagggacc agaggaatcc ttcactgctg agcctgggag ccatggttgg gatggtcttg
      601 gccaaagttg tggtcatcat ccccctgtat ggatggatga tcttcctgtg gtggaagcaa
      661 aggccagcag cataaagact aaactctagt aaggtgagtg cctgtcatct caagggacag
      721 acgaggagct gctgggaagt tcattatgag aagcatggaa gggagcccga gcgataattc
      781 tgtcagaaac acatggcaca ggggtaggag gacctgagtt tgatggatca ggagcttgca
      841 cccagggatg tggcatgaat ttgcaatccc agccctggtc gagcaagaga caggcagaga
      901 cagattggct gaacaccaag tataggacac ttggtgagtt ccaggcctgt gaaagattgt
      961 gtctttaaaa attaggggga ttgctcaagg tgataaatca tgcacataac attttctaaa
     1021 ttgatttttc ctgaaatatt ttaaattaca catgaaggaa gaaaaatagt acatgccagt
     1081 gagctagctc agtgggaaac ggagtctgct gcctagccca gtgacctggg aatgatttct
     1141 gcggacccaa atggtacaca gagaacactg actctggaca tctgtcatct gtctctcctg
     1201 ttgcccacca gatgctggta acaaataatt ttgtattcct caactaacag gctcctcagt
     1261 gctaggatct ctcatcaggg aggtgaattt acatcaaagt agttgttggt gattacacac
     1321 cctgcatccc acagccttcc atgtcttctc gctgggagtc agtcatcatg gctgcaggat
     1381 tctcctgtga aaatcattct tggataactc ccacttctgc catggggact cagacatgct
     1441 ctccttggaa ccatggacct cctgtgtgtc tctgggcctg agaccctgac tgtgctgttc
     1501 tctctctgtt catggagtta ttgacactgt taataaatat cttactccca caa
//
