LOCUS       XM_217535               1035 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus similar to synaptonemal complex
            protein 3 (RGD1563270), mRNA.
ACCESSION   XM_217535
VERSION     XM_217535.7
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051356.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_217535.8.
            
            On Jan 21, 2021 this sequence version replaced XM_217535.6.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1035
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1035
                     /gene="RGD1563270"
                     /note="similar to synaptonemal complex protein 3; Derived
                     by automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 EST, 1 long SRA read, 1 Protein, and 100% coverage
                     of the annotated genomic feature by RNAseq alignments,
                     including 6 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:302172"
                     /db_xref="RGD:1563270"
     CDS             160..798
                     /gene="RGD1563270"
                     /codon_start=1
                     /product="synaptonemal complex protein 3-like"
                     /protein_id="XP_217535.4"
                     /db_xref="GeneID:302172"
                     /db_xref="RGD:1563270"
                     /translation="MDSRKHFSVYSFYSGEDEEEVGENDDVLEYSTHSTPTARSPVFS
                     NTEKAVVPPRRDGRDTRNEVKNRMENIGAHLSNAVLEKKKRMESYIKGAVKDCDKHIK
                     QHWKVHQDEVREFKIEYTEQIITLFHQWDSDMKKVGDLEDNLTSAFCQQQKTFQQSRS
                     RQSHSLKALKQENDKFLKSMENLEKDKSSVLSSIHSEFKKQIVFLQRKITDG"
ORIGIN      
        1 atgagcttat ctttcagcca atcagcaagg agccttgatg gtcctggctt ttctctcact
       61 cggctgagac tccattttgc cgaagaagct tcaagaagaa tgctggagtt gtgagagtct
      121 tcgcttaact ggagaccggc tacatttttg aagctgataa tggacagtcg gaagcacttt
      181 tcagtctata gcttttatag tggtgaagac gaagaggaag tgggagaaaa tgatgatgtt
      241 ctggagtact caacacactc tactcccaca gcaagaagcc cagtatttag taatactgag
      301 aaggcagtgg ttcctccaag aagggatggt agagatacaa gaaatgaagt aaagaatagg
      361 atggaaaaca ttggagctca ccttagcaat gctgttcttg aaaagaaaaa gagaatggag
      421 tcatacatta aaggtgctgt taaagactgt gacaagcata tcaaacaaca ttggaaagtt
      481 catcaggatg aagtacggga gtttaaaatt gaatatactg agcagattat aactctgttt
      541 catcagtggg attctgatat gaagaaagtt ggagatcttg aagataacct aactagtgcc
      601 ttctgtcagc aacagaagac ctttcaacaa agtagatcac ggcagagcca cagcctgaaa
      661 gcccttaagc aggaaaatga caagttctta aagagtatgg agaacttgga aaaggacaag
      721 agcagtgtac tttctagtat acacagtgag tttaaaaagc aaattgtttt cctgcaaaga
      781 aaaattacag atggctaagt atcaatttct aaaagcatgg aatacaaaaa gcaccaagat
      841 aatttgtttt cctgacgtta aatgtttttc tgatgagttt tgagaaaatc ttgaacctga
      901 gttgatgtaa ttcatattat ctcagacaca tgtcttacca atttgactgt attttatatt
      961 atcttctgtc attaactgtt taaagtgtga cacctctatt cctattgagt tctaaataaa
     1021 cagttgttaa cctgt
//
