LOCUS       NM_001419543            4078 bp    mRNA    linear   ROD 30-MAR-2024
DEFINITION  Rattus norvegicus high density lipoprotein binding protein like 2
            (Hdlbpl2), mRNA.
ACCESSION   NM_001419543 NM_001106967 XM_039099668
VERSION     NM_001419543.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 4078)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000021.1.
            
            On or before Apr 7, 2023 this sequence version replaced
            NM_001106967.1, XM_039099668.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643293.32850.1,
                                           SRR26360181.1737117.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-53                JAXUCZ010000021.1  93888744-93888796
            54-191              JAXUCZ010000021.1  93903283-93903420
            192-4078            JAXUCZ010000021.1  93906393-93910279
FEATURES             Location/Qualifiers
     source          1..4078
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /map="Xq31"
     gene            1..4078
                     /gene="Hdlbpl2"
                     /gene_synonym="RGD1563104"
                     /note="high density lipoprotein binding protein like 2"
                     /db_xref="GeneID:302773"
                     /db_xref="RGD:1563104"
     exon            1..53
                     /gene="Hdlbpl2"
                     /gene_synonym="RGD1563104"
                     /inference="alignment:Splign:2.1.0"
     exon            54..191
                     /gene="Hdlbpl2"
                     /gene_synonym="RGD1563104"
                     /inference="alignment:Splign:2.1.0"
     exon            192..4078
                     /gene="Hdlbpl2"
                     /gene_synonym="RGD1563104"
                     /inference="alignment:Splign:2.1.0"
     CDS             288..4040
                     /gene="Hdlbpl2"
                     /gene_synonym="RGD1563104"
                     /codon_start=1
                     /product="uncharacterized protein LOC302773"
                     /protein_id="NP_001406472.1"
                     /db_xref="GeneID:302773"
                     /db_xref="RGD:1563104"
                     /translation="MNSKRNSASYQNMSVQKENHYKSSNDVVHMSRYNKEVTEHPKKI
                     NFSENPEETAESSSINIFKAGEISTLTQVFHVLLEKENYLTQFGEGTLAKFYAHIMEN
                     TGVNLESSFIKDQGLYVTVFGNSEAVTNAENEILKWCQEKYLPLTLISKQEHCFFLDQ
                     TGDKSQDTEQEAEINAQIISPHNHSHYINTVDTNLTKMKSSDGSLSTSDRNSKSDIQI
                     LEMEKAFNPRIGKPYLQASDIFQETEEHVPFQLSSANETDVDINERQLNVDQTRCHKN
                     DMTEKSSTITEGMMMKFQGNYTRSLKRNFLEEILETSEDSTGQSPSESISDSMTQHSE
                     PDSSGEIFNEVHGNDDDYIVSSIFAPSWLHRFIIGKKGEKIAEISECVPKVQIHFTAK
                     DKITLKGPIDDVNYAQEKFDIIVKDLISRMEYTEINGDSKFHKYLTGNNGAILNKIAE
                     RNQVSITMVPENELNHTIRIEGESLGVQQAKKELLDLANNLEEEYSQDIIIKHQFHHI
                     LIGQKGERVREICKKFPDVILNFPHPAEKSDIVQLIGPRYESEKCAQYLENMLTDIKE
                     NNYSISISIIKKLHKRLIGKGASNIKKISETTNTKISFPPENCNSEEFIITGYPENCE
                     IARNWILSIQQEIADTAEEEITIPTNLYKYLNNPKECLLNSIIEECGKIHLHFPKNKS
                     SLNKVIIMGSVESVEKAKAKLLKLAEEEQAKNYSEKIRVKSQYHQFLVNKNGGNISQI
                     CDETGTCVLFPNHTNKDQESLTITGSEESVKEVQKRLEDLVKDFENEVDDSILINRRF
                     HHYFVMRRGQLLKEMTEEYGGVVITFSYAGRQNTKVTIKGAKPCVEAAKKHIKAIFEP
                     LGSQVTTRYVIPQNFQPFIMGPITSRIQQIARDYKVEIKFPDIEKPAINMDLATQEKG
                     KEKWKKPAKDLAPNSPRKSDTIFISGQVENCKAATEALASIIPVTAEVHVPLHLHPYI
                     IGHKGSGLRKLVKEFEVHMQPPQPGKNSDIISIMGLAANVEQAKMKLQKRVKALQMEI
                     EDRTLRNFKLMFNLDSKYRAKITGHKGLLITQICTEHDVTVRFPKKGSHEVQDQITIT
                     GYKENTLAARDAIMRVLHKIEKTISKEITLNQQVRSNVFGFRGKTINKIMDQYQVDIR
                     SPPKGSYNPNITVTGLPDNVEKAIEHILNLEKYYLSAAANHESQQEEAKSMSLCNIAM
                     TPSKSFVRKYVPCYAKTTTKLPDVDNCEHFPRLKQRISSKTHPSKL"
ORIGIN      
        1 tgtagattca gaaagctcca gctttgtcca gtctggtagt tcatcctttc cagctttgcc
       61 attcacattg aggccagtca ccagttccat gaagttttca tctctaatta ttatagagcc
      121 ctgtgagcta agtctgtgct ctcagagatt tatcatcaag cagaagccta taaactggac
      181 aagaagaaaa gtaatatgca aggaggcagc tacaggaaat atttgtggtt ttgctattga
      241 cattttatct gcaacacatc tgaattgaat cttctcaaaa atcaacaatg aattccaaaa
      301 gaaattctgc ttcataccaa aacatgtctg ttcaaaaaga aaatcattat aaaagttcaa
      361 atgatgtggt acatatgtcc agatataaca aagaagtcac tgaacaccca aagaaaataa
      421 acttttcaga aaatcctgaa gaaactgcag aatcatcaag cattaatatt tttaaggctg
      481 gggaaatttc aaccctcact caggtttttc atgtattact agaaaaagaa aattatttga
      541 ctcaatttgg tgaaggtaca ttagcaaagt tttatgcaca tatcatggaa aacactggtg
      601 tcaacttaga atcatctttc atcaaagacc aaggtcttta tgtgacagtg tttggcaact
      661 cagaagctgt cacaaatgct gagaatgaaa ttttgaaatg gtgtcaagaa aaatatttac
      721 ctttaactct catttccaaa caagaacatt gcttttttct agaccagact ggtgataaat
      781 cacaagatac ggagcaagaa gctgaaataa atgctcagat cataagtcca cataatcata
      841 gccattatat aaatactgtt gacacaaatc ttacaaagat gaagtcttca gatggaagcc
      901 tatctacatc tgacagaaat agtaagagtg atatccagat attagaaatg gaaaaagcat
      961 ttaatccccg aattggtaag ccataccttc aagcaagtga cattttccaa gaaacagagg
     1021 aacatgtccc ttttcaactc tctagtgcca atgagacaga tgtagatatt aatgagagac
     1081 aactgaacgt ggatcagaca cgttgtcata aaaatgatat gactgagaag tccagtacta
     1141 taactgaggg tatgatgatg aagtttcaag gcaattatac cagaagcctc aaaagaaatt
     1201 ttctggaaga gatcctagaa acaagtgaag attcaacagg acaatcacca tcagaaagca
     1261 tatcagattc tatgacacaa cacagtgagc ctgacagttc tggggaaata tttaatgaag
     1321 ttcatggcaa tgatgatgat tatattgttt cttcaatctt tgctccttct tggttacaca
     1381 ggtttattat tggtaagaaa ggtgagaaaa tagctgagat atcagagtgt gtgccaaagg
     1441 ttcaaataca ctttacagct aaagataaaa taacgctgaa aggaccaata gatgatgtaa
     1501 attatgctca agaaaaattt gacatcattg tcaaggacct aatcagtaga atggaatata
     1561 ctgagataaa tggtgatagt aaatttcaca agtacctgac agggaataat ggagctatcc
     1621 taaataaaat tgcagagagg aaccaagtct ctatcacaat ggttcctgaa aatgaattga
     1681 accacacaat tcgaattgaa ggagaatctc tgggtgtcca acaggccaaa aaagaactcc
     1741 ttgatctggc taataacttg gaagaagaat acagccagga cataatcatc aaacaccaat
     1801 ttcaccacat acttattggg caaaaaggtg aaagagttcg tgaaatttgt aagaaattcc
     1861 cagatgttat actcaatttt ccacatcctg cagagaaaag tgatattgtt caactgatag
     1921 ggccaagata tgaatcagag aagtgtgcac agtatttgga gaatatgtta acagatatta
     1981 aagaaaataa ttattctata agtatttcta tcataaaaaa gcttcacaaa aggttaattg
     2041 gaaaaggagc ttcaaacatt aaaaaaatct ctgaaacaac caacaccaag attagttttc
     2101 caccagaaaa ctgcaattca gaagagttta tcattactgg atatccagaa aattgtgaaa
     2161 ttgcacgtaa ctggatactt tcaattcagc aagagatagc tgatactgca gaggaggaaa
     2221 ttacaattcc tactaatcta tacaaatatt tgaataatcc caaagaatgt ttattaaatt
     2281 caatcataga agaatgtggg aagatccatc tgcattttcc aaaaaacaag tcaagcctga
     2341 ataaagtaat tatcatgggc tctgttgaaa gtgttgaaaa ggccaaagca aagcttctaa
     2401 aacttgcaga agaagagcaa gccaagaatt actctgagaa aattcgtgtc aaatcacaat
     2461 accatcagtt ccttgtgaat aaaaatggag gtaatatttc ccaaatctgt gatgagaccg
     2521 ggacatgtgt ccttttccct aatcatacga ataaggatca agaatccctc acaattacag
     2581 ggagtgagga atctgttaaa gaggtgcaaa aacgactaga ggatttagtt aaagactttg
     2641 agaatgaagt ggatgattcc atactaataa accgtagatt tcaccattat tttgtcatgc
     2701 ggagggggca gcttttaaaa gaaatgacag aagagtatgg tggtgtagtt attacatttt
     2761 cttatgcagg gagacagaat acaaaagtca caataaaagg tgcaaaacct tgcgttgaag
     2821 cagcaaagaa acacattaag gcaatttttg agcctttggg ctcccaagtg acaacacgat
     2881 atgttatacc acagaatttc caacctttta tcatgggacc aataacttca cgaatccaac
     2941 aaattgctag ggattataaa gttgaaatca aatttccaga tatagagaag ccagccataa
     3001 atatggatct agctactcag gaaaaaggaa aagaaaagtg gaaaaagcct gctaaggacc
     3061 ttgctcctaa ttccccaagg aaaagtgaca ccatatttat ctcaggccaa gtggaaaatt
     3121 gcaaggcagc tactgaagct ctagcatcta taattcctgt cactgctgaa gttcatgtgc
     3181 cccttcacct acatccatat atcattgggc acaagggaag tggtttacgt aaactagtaa
     3241 aggaatttga agttcatatg cagccaccac aacctggaaa aaattctgat atcatatcta
     3301 ttatgggtct tgcagcaaat gtggaacaag ccaaaatgaa attacaaaag cgggtcaagg
     3361 ctttacaaat ggaaatagaa gatcggaccc taagaaattt taagttaatg ttcaacctag
     3421 attctaaata tcgagctaag atcactggtc ataagggctt gcttattact caaatttgca
     3481 cagaacatga tgttactgtc cgttttccaa agaaaggaag ccatgaggtg caagaccaaa
     3541 tcactattac tggttataaa gagaacactc tagctgctcg agatgcaata atgagagtgt
     3601 tacataaaat tgaaaaaaca atttctaaag aaatcacact aaaccagcag gttcgtagca
     3661 atgttttcgg attccgtgga aaaaccatca ataaaatcat ggatcaatac caagtagata
     3721 tacgttcacc tccaaaaggg tcttataatc ctaatatcac agtgactggg ctccctgata
     3781 atgtagaaaa agcaattgag catatcctta atcttgaaaa gtattatctg tcagctgctg
     3841 caaaccatga atctcagcaa gaagaagcta agagtatgtc cctttgcaat atagccatga
     3901 caccatccaa aagttttgtg agaaagtatg ttccctgtta tgctaaaaca accacaaagc
     3961 tcccagatgt agataattgt gaacactttc caagattaaa acagcgaata tcatctaaga
     4021 ctcatccttc aaaattgtga aaattatgat caaaaaataa agtgttccaa aattctca
//
