LOCUS       XM_039082358            7744 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus RGD1562811 (RGD1562811), transcript
            variant X1, mRNA.
ACCESSION   XM_039082358
VERSION     XM_039082358.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051343.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7744
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..7744
                     /gene="RGD1562811"
                     /note="RGD1562811; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 7 ESTs, and 100% coverage
                     of the annotated genomic feature by RNAseq alignments,
                     including 2 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:315651"
                     /db_xref="RGD:1562811"
     CDS             165..5129
                     /gene="RGD1562811"
                     /codon_start=1
                     /product="uncharacterized protein RGD1562811 isoform X1"
                     /protein_id="XP_038938286.1"
                     /db_xref="GeneID:315651"
                     /db_xref="RGD:1562811"
                     /translation="MKVLFSGTLPEVPILIAVFCFILQSPTCLVIEHPQDCQGRSCSR
                     ATPAPCPPGTFLSGMGPHTTPVCHLCPSEFFNPWHGQNACFPCGSEATQPKEGKDTCV
                     CQKPGRVFQPSDGQCPCLPGHEDIGEPVGCVQREHEICRNGATWNQEGICLTKEQWDD
                     HCAQEVCPTPGEAHGYDPHLGLCLCWGQQPSGMCGTLCSGEQRHILQLSCAQGIPRIA
                     IPEGTGSQEFYLLDKPSSPRAVGHPCNLDQGTKSVPLYVIKVNEHGFQGLIRPGPELL
                     HLLGLPLVDLKHSDQGPGNLTDEHQIYPWSPGLNSTYSGDVLGIQNPIVCLQTNDTLA
                     FLVSREHYPVYDLGHFYNTLQQFDWGRFRALAEESQLSEQSLFLQQFQLPGVYVFYLS
                     SNRHRKMYLRTLPPGGRCFADGPFALTTPRNLIQTGIAKIPKPVKKAHWPGLLGGMLL
                     LLGLCLLLLIQCRSLGWAQKAAPHPIFRTHQQRYNLDVYISPTTGMTSVRRGQSPRDC
                     EVLRVEGSRGGTWEDQVDLEWFDTEAFFEILHRQSLTVTANLSQTNKELKVLHLKLLK
                     EASSLRQLWGTQRCTSTNQILTQRKQQEAAEAVTRAAEEESRQRRSLAGEYAASLAHQ
                     LEILHQDLRTRQDQWASFCSALMEAQWLLKASASANPERSPQPGQSPGEVTSQLDTLL
                     GHLSQAMLQEGHRLKAWGFLDTGTGAELLQAASAGPQKGAEDIIVNPVTKLMVPGPSC
                     MMILPTSGHIAPIPPSYFVHPDTGHVLPEAGHLGYDLLSSALIPITDTNAGDVRTSEV
                     TVLPYMPYPTSPVTGCPPDTHLPILQPRRTSQLGALMSDPITGMEVPVLAVTLHPQTR
                     QWLTLGGTYCNPLTKTMAPLELGGPMKDPVTGGIVPILGVGLDEHTGQVFAVGGLRDA
                     TGSLLMPGDSFVEPLSGKTVRLLGASQQAGQIAAHAGGSQALLDANVLVAQRQVIRML
                     QQCRETSGSRAQEPLESAIKGMKQALALSLHHILHQARRLERQLAAARDIEASGGQIG
                     MMCYPGTELWVPALYGMEIPDPEGSGLMVPILGMHRDGDSGATTPLAGTMEEAAGKGL
                     VPISIGAQAIDPITGEHGPVIGVQMDPSARVVVPVVQVLEALPRGAGDPELQNLLERE
                     LRARQQYWQLQEQEEQRLAQHLWHLSQELRFHLGHEVRLELRAAEDACAALEACCLQE
                     TERRARVLSILSITEWCLLSQADRKEWEEESQVVLAMRKVLHSLVQASEKLRKVSLRL
                     QGQEEEVCLQQSQNHSPQVCNHQRMVVQHLSDGFQEVVRDRQNFLARALGQLQYHREL
                     SRLQLLHIQLKASGTPVCLENYPGERFYGTVTTSLGNQAAVCPLLVPFLRGITAMLVE
                     DQGCHLELEDQRPGGDSDKVDNIWTPPLLSIMKKIDTWPQDSREIAELQGRIHLRPGQ
                     KNPLKNLLKTETTQEELETVHATKLSAWEFLVYQYGCSVLHLLVPQLQAPETTLQIAS
                     CLPVVEASGNAFQGSFFYQSTENTLFVERECLASVGSFVLLLIHCLAHIATGDFNQDS
                     NPRFLELFYQGLRVYFKEAFTTTLQMSAVPWDNKFDQNLIALLLKEQPISERERDLLS
                     KLIERKPEPCLARESSEEYIKKNKDLLLFNNMEHFLKSILSAKQ"
ORIGIN      
        1 cttctgttga gcaccctgac cttgtcttct cctcatgccc atcactctgt ctgtcacact
       61 gcttccccta cctctccacc tctgcctgaa accttccttg gtgcctcgcc tcccccaccc
      121 ccacatctgc tttgccctct gctgctgtta cccctgccca gaagatgaag gttctcttct
      181 cggggaccct cccagaggta ccgatcctca tagctgtctt ctgcttcatc ctccagagcc
      241 ccacatgcct ggtcatagag catcctcagg actgtcaggg taggtcctgc tctagggcga
      301 cacctgcccc ttgtccccct ggaaccttcc tctctggaat gggtccccac actacccctg
      361 tctgccacct ctgcccttcg gagttcttca acccctggca tggccagaat gcttgtttcc
      421 catgcggctc tgaggccacc cagccaaagg agggcaagga cacctgtgtc tgccaaaagc
      481 ctggacgagt tttccagccc agtgatggtc agtgcccttg cctccccggc catgaagaca
      541 ttggtgaacc agtgggctgt gtccagaggg aacatgagat ctgcaggaat ggagccactt
      601 ggaaccagga ggggatatgt ctgaccaaag agcaatggga cgaccactgt gcccaggagg
      661 tttgtcccac accgggagag gctcatggct atgacccaca cctggggctc tgcttgtgct
      721 ggggacaaca accgagtgga atgtgtggaa ccctctgctc aggagagcag agacacatcc
      781 tgcagctcag ctgtgctcag ggcatcccac gaatcgccat ccctgaaggc actggaagtc
      841 aggaatttta cctcttggac aagccttcct caccacgtgc cgtgggtcat ccctgcaact
      901 tggaccaagg gacaaagtct gtgcctctgt atgtgatcaa ggtgaatgag catggcttcc
      961 agggtctgat cagaccaggc cctgagcttc tgcacctact gggcctgcct ctcgtggatc
     1021 tgaagcattc agaccagggg ccagggaact taacagatga acatcagatc tacccttggt
     1081 caccgggtct caattccaca tactcgggag acgtgttggg tatccagaac cctatagtgt
     1141 gcctccaaac caatgataca ctggctttcc tggtgtctcg tgagcattac ccagtatatg
     1201 acctgggcca cttctacaac acattgcagc agtttgactg ggggcgcttc cgggccctgg
     1261 ctgaggagtc ccagctctct gagcaaagcc tcttcctgca gcaattccag ctgcctggag
     1321 tctacgtctt ctatctgagt agcaaccggc accggaagat gtaccttcgt actctaccac
     1381 ctgggggccg gtgctttgcg gatgggccct ttgccttgac gacacccagg aatcttatcc
     1441 agactggcat tgccaagatc cccaagccag tgaagaaggc tcactggcca ggactcctgg
     1501 gggggatgct gctgcttcta gggctctgcc tgcttctgtt gatccagtgt aggagcctcg
     1561 gctgggctca gaaggctgcg ccacacccca tcttcaggac tcaccagcaa agatataacc
     1621 ttgacgtcta catctcccca acaactggga tgacctcagt gaggagaggc caatctcccc
     1681 gagactgtga ggtcctcaga gttgaaggga gtcgtggtgg gacctgggag gaccaggtag
     1741 acctcgaatg gtttgacaca gaggccttct ttgagatcct acatcggcag tctctgacag
     1801 tgacggccaa tctcagccaa accaacaagg agctcaaagt cctccacctc aaacttctta
     1861 aggaagccag ttccctccgg cagctgtggg gtactcagcg ttgcacctcc actaaccaaa
     1921 ttctaaccca gagaaaacaa caagaggctg ctgaggcagt gaccagggct gcagaggaag
     1981 agtctcggca gaggagaagc ctggcgggag agtatgcagc aagcctggct caccaactgg
     2041 agatccttca ccaagacctc cgcaccaggc aggaccagtg ggcctctttc tgctcggcac
     2101 tgatggaagc tcaatggctg ctgaaagcat ctgcaagcgc taacccagag aggtcccccc
     2161 agcctgggca aagtcctgga gaggtgactt ctcagctgga cactctgctg ggccacttgt
     2221 cccaggccat gctgcaagaa ggccaccgct tgaaagcttg gggtttcctg gacactggca
     2281 caggggcgga gctgctacag gcggcctcgg caggtcctca aaaaggtgct gaggacatca
     2341 ttgtgaatcc tgtcaccaag ttgatggtcc ctggacccag ctgtatgatg atactcccaa
     2401 caagtggcca catagcaccc atacccccca gctacttcgt ccaccctgac actgggcacg
     2461 tgctgcctga ggctggacac ctaggatatg atctgctgag ctcagcgctg atacccatta
     2521 ctgacactaa tgctggtgac gtccgaacat cagaggtcac cgttctcccc tacatgccct
     2581 atccaacgag tcctgtcaca ggttgccctc cagacactca cctgcccatc ttacagccaa
     2641 gaagaacatc acagctgggg gctctcatgt ctgaccccat cacaggcatg gaggtgcctg
     2701 tgcttgctgt gactctgcac ccccaaacca ggcagtggct cactctcgga gggacatact
     2761 gcaatcctct caccaagacg atggcccctt tggagttggg gggccccatg aaggacccag
     2821 tcacaggagg catcgtgcca atcctaggcg ttgggctgga tgaacacaca ggtcaggtgt
     2881 ttgcagtagg agggcttcga gatgccacag ggagcctctt gatgcctggt gacagctttg
     2941 tggagccgct gagtgggaag acagtgcggc tcctgggagc ttctcaacag gcaggccaga
     3001 tagcagccca tgcagggggg tcccaggccc tgctggatgc caatgtcttg gtggcccaga
     3061 ggcaagtgat caggatgctc cagcagtgtc gggagacttc gggatccagg gcacaagaac
     3121 cgctggagtc tgccataaag ggcatgaagc aagcattagc cttgagtctg caccacatcc
     3181 tccaccaggc tcggaggctg gagagacagt tggcggcagc gcgtgacatt gaagccagcg
     3241 gtggccagat aggaatgatg tgctaccctg ggacagagct ctgggtgcca gctctgtatg
     3301 gaatggaaat cccagaccct gaaggctctg ggctcatggt gcccatcttg ggcatgcatc
     3361 gagatgggga ttctggtgct accacacccc tggccggcac aatggaggaa gctgctggta
     3421 aaggtcttgt cccaatctcc attggggctc aagccataga tcccataact ggggagcatg
     3481 gccctgtcat tggtgttcaa atggacccct ctgctagagt ggtggtgcct gtggtgcagg
     3541 tgctggaagc cttgccgcgt ggagcgggag acccggagct gcagaacctc ttggagcggg
     3601 agctgagggc ccgtcagcaa tactggcagc tccaggagca ggaggaacag cgcctggcac
     3661 aacacttgtg gcacctgagc caggagctcc gcttccacct aggccacgaa gtcaggctgg
     3721 agctgagggc tgctgaggat gcttgtgcgg ccttagaggc ctgctgcctg caggagacag
     3781 aacggcgagc tagagtcctg agcattctca gcatcacaga atggtgcttg ctttctcaag
     3841 cagacagaaa agagtgggaa gaggagtcgc aagtggtcct ggctatgcgg aaggtcctac
     3901 acagtttagt gcaggcctca gaaaaactca ggaaagtgtc cctcaggctt caaggccaag
     3961 aggaggaggt gtgcttacag cagagtcaga atcatagccc acaagtctgc aatcatcaga
     4021 ggatggtagt gcagcacctc tctgatgggt ttcaggaggt ggtgagggac agacagaact
     4081 tcctggccag ggctcttggt caacttcagt atcaccggga gctcagccgt ctccagctct
     4141 tgcatatcca gcttaaggcc tcgggaactc ctgtgtgttt ggagaattac cccggagaga
     4201 gattctatgg aacagtcacc acatctctcg ggaaccaggc tgctgtctgt cctctgttgg
     4261 tccctttcct gagaggcatc actgcaatgc tcgtagagga tcaaggctgt catctagagc
     4321 tggaagatca gaggccagga ggagactcag acaaagtcga caatatctgg actccaccat
     4381 tactctccat catgaagaaa atagatacct ggccccaaga ctccagggaa atagctgaac
     4441 tacaaggacg aatacacctc agaccaggac aaaaaaaccc tttgaaaaat ctcctgaaga
     4501 ctgagacaac acaggaagag ctggaaactg tgcatgccac gaagctttct gcctgggaat
     4561 ttttggttta ccagtatggc tgctctgtcc tgcacctcct ggttccccag cttcaggctc
     4621 cagaaaccac cttacagatt gcttcttgtc tgcctgtcgt ggaggcctct ggaaatgcct
     4681 tccaaggttc cttcttctat cagagcactg aaaacaccct gtttgttgag agagagtgct
     4741 tggcctctgt gggaagtttt gttctgctgt tgatccactg cctggcccac atcgctactg
     4801 gggactttaa ccaggactcc aaccccagat ttctggagtt gttctatcag gggctgagag
     4861 tctacttcaa ggaggcattt actactacat tgcaaatgtc agcagttccc tgggacaata
     4921 agtttgatca aaacctaatt gctctcctgt taaaagagca gcccatttct gagagagaaa
     4981 gagacctcct ctctaagctc attgagagga agcctgagcc ttgcttggca agagagtcat
     5041 cagaagagta tattaagaag aacaaagatc ttctcctctt caacaatatg gaacatttcc
     5101 ttaaaagcat tctttctgca aagcaatgat aacatgaaga gctggactca gcggcaaaga
     5161 aaagtgcttc tcatatgcat gcgtgtgact atcaactggg acatgagcaa cttaccagtg
     5221 gctacatccc ccacggaaga gtgaccctcc ttcagcatcc atcaacggca aatgtctcct
     5281 ccagcaggag tgggacccca aggaattgac tttcccccct tagtaaatac taactagaat
     5341 tccaaagaga caagccatgc tctgctgcaa atagcaggag actcctgcgt ctctcccatc
     5401 aacatctgtg tctctcccat caatatttgg cattttacat cttttgtaat tcatccatgc
     5461 ttctgggtgt gtggcatatg ggagagatat tgaactttca ttttataata accaccatca
     5521 agactcagtg tttcaagtgt gaatattcaa gtgtttgaat atcttgccta tttcccactg
     5581 agctccctat tttctgactt ctagaaatta attttcataa ttttatgaac cttttaaaga
     5641 taaaagtaac ttcttctgtt ttatttttag acctagaaag tggaaaaata ttcaatacaa
     5701 catctgagaa atgtaaatgg tttgaaaata tctgttcatg cataagtcat acacatgtat
     5761 agcatagtgt ctgtcacaga agaaacaaac ttgatgtttt tatgactgaa agaattatac
     5821 ctagtgtgct acttgttaag atatgactga ccacttcctg aaataggaaa atctcttacc
     5881 actgagtaac atgaagtaga tgatgtatag ggacatttct gagaacatgt caattagaca
     5941 atgtagacca tgtgtcgacg tacttaagat atagattata tgtcaatgta tttaagatgg
     6001 agaccatgtg acagaattct ctgtagggct tggctgaagc accccaagca gtaagatacc
     6061 atccgaagct aagtttccag ggtgagttaa aggtcaggac agggaccacc agtacttgca
     6121 atgattgcaa gaaaacttag aaatacaaac tccaaactta aaacctgagg aagttacaga
     6181 tccactggct gcaattcaag cctttcccca ttcggataat tctctttatt gcactgcaag
     6241 atgaatagca gagatttttt ttaatgtagt aacagttaag gagtatcctc agcaatggaa
     6301 agaaggcaga ctaggaagag attaaaactt tatgcaatag gactggagct ggaggtcagt
     6361 ggcagggcat ccacagggtc ctgagttcaa tttccagtgc gtgccccaca ccaaaaaaac
     6421 aaataataaa cctctacaca ttttatttgg gtaactagtg aatattaagt aatcagtaag
     6481 ttcattggtt ttgttcgttt tgtttttcca gtactgagtc tagggacctt aaacacagga
     6541 ggcacgtact caacaattga gctatatccc cagcctcaca tcaggcatta ctcattcaaa
     6601 atttcatcct gcagatcttt tgccacaatt aagggctgtc tatgtgtagc tctacattta
     6661 gccccgagtt caacaaatcg aaatattagt ggaaattact gcagagaaag ttgaaagtgc
     6721 tggaagccta gcgtggtggc acatacttgt aatctcagca ctgaggccaa ggtagaaaag
     6781 tcatgagctc caggccagtc tggtctacat ggtcaaactc cgtttcaaga tccaacttga
     6841 gatacttgag acctcatacg atttataatt aaggtttaac aagagtttta aaatcaagcc
     6901 ataaagaaca ccgactcaga agcatctctg gctccttcca ccggtgttgc cattgggtcg
     6961 gagatcaagc tgtcctctga acttagttct atttaaatag gttagtcatc gtgcaaagta
     7021 aggactgatg tgtgtggtgg tttggatgac aatggccctg catgctcata tatttaaatg
     7081 cttggcccca agttggcgga actgtttggg aaggattaga aggtgtgctg gctagtttaa
     7141 tgacacacaa ccatttagtt ggtagagtta tttgaaagga ggaaccaatt gagaaaatgc
     7201 ctccataaga tctagccgaa gggcttgttc ttaattagca attgatgggg gagagccctg
     7261 cccattgtga gtggcaccat ctcccagctg gtggacctgg attctctaag aaagctggct
     7321 aagcaaagcc agtaaacagc actcctcctt ctgcttcagc tcctgtctcc aggttcctga
     7381 gctgtctgag ttcctgtcct gacttctttc aatgatgtat attgaagtgt aagccaaata
     7441 aaccctttct tccccagctt gcttcggata tggcatttca acacagcaat agtaaccttg
     7501 actaagacag gaggacatct tgttggagat gtgtcactgg gaacaggcat taaggtttca
     7561 taagtctaca ccattcccag ctagttcttt ctaactcata cttgtgaatc tgcatgtgag
     7621 ctcccagcta ttgctccagc attatgcctg cctgcctgcc tactgcccca tgctccccta
     7681 ccatggtggt catggactaa ttctctgaaa ctgtaaacct acaataaact cttctacaag
     7741 tttg
//
