LOCUS       XM_017598625            2816 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus similar to cell surface receptor
            FDFACT (RGD1562525), transcript variant X1, mRNA.
ACCESSION   XM_017598625
VERSION     XM_017598625.2
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051347.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Jan 21, 2021 this sequence version replaced XM_017598625.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2816
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="12"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2816
                     /gene="RGD1562525"
                     /note="similar to cell surface receptor FDFACT; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 7 Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 43 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:363899"
                     /db_xref="RGD:1562525"
     CDS             237..911
                     /gene="RGD1562525"
                     /codon_start=1
                     /product="paired immunoglobulin-like type 2 receptor beta
                     isoform X1"
                     /protein_id="XP_017454114.2"
                     /db_xref="GeneID:363899"
                     /db_xref="RGD:1562525"
                     /translation="MARILLLLLSAACLHTGNSSGYRRVNDFGVNQPAVLSGVQGGSI
                     EIPFSFYFPWELANDRSMSIAWIWKYFHGEVIYNSTQPFLHEHFKGRLIMNWTQGQTS
                     GVLRILNLKENDQARYFSRVFLRTTEGMKSWQSIPGTQLIIHALNTTMGSPSIIPSAV
                     PTAGLEDKRGQRNPSLLNLGVMVGMVLAKVVVIIPLYGWMIFLWWKQRLLRTRISHQG
                     GEFTSK"
ORIGIN      
        1 gggtggatct tttgcaacat cggaaaagca gaagccagat cagtaaagga agttgctggc
       61 cacaaggagg tagagatggt cctgctcaac tcagtcttcc acttgagaat gtctgagcgt
      121 gtgtttttat ttaccctgat tctctctgga ctgctgagtg ccccagtgcc cctagacagt
      181 gcaacctcga cttcctgaca gccctgctgg tctcactacc tgaacagaat ctggctatgg
      241 ctcggatcct ccttcttttg ctgtcggcag catgtctgca cactgggaac tcatcaggat
      301 acagaagagt aaatgacttt ggtgtcaacc aaccagctgt cctctctgga gtccagggcg
      361 gctccatcga gatccccttc tccttctatt tcccctggga gttggccaat gatcggtcaa
      421 tgagcatagc ctggatatgg aagtacttcc atggggaagt catctacaac tccacccagc
      481 ctttccttca tgagcatttt aagggccggc tcatcatgaa ctggacacag ggtcagacat
      541 ctggtgtcct cagaatcctg aacttaaagg agaatgacca ggccagatac ttcagccgag
      601 tttttctgcg aacaactgaa ggcatgaagt cgtggcagtc aatccctggc acccaactca
      661 tcattcatgc tctcaatact accatgggga gcccctctat catcccctct gcagtcccca
      721 cagctggcct ggaggacaaa aggggccaga ggaatccttc actgctgaac ctgggagtca
      781 tggttgggat ggtcttggcc aaagttgtgg tcatcatccc cctgtatgga tggatgatct
      841 tcctgtggtg gaagcaaagg ctactccgta ctaggatctc tcaccaggga ggtgaattta
      901 catcaaagta gttgttggtg attacacacc ctgcatccca cagccttcca tgtcttctcg
      961 ctgggagtca gtcatcatgg ctgcaggatt ctcctgtgaa agtcattctt ggataacccc
     1021 cacttctacc atggggactc agacacgctc tccttggaac caaggtcctc ctgtgtattt
     1081 ctgggcctga aagcctgact gtgctgttgt ctctctgctc atggagttat tgacactgtt
     1141 aataaatatc ttactcccag caatccatct cagtgtctct cctgagcctc tgtcttttcc
     1201 ccttcctgac acttcttaga gagtgtagac tgtgtctagg gtgtaggtca ctgggataga
     1261 tgtaagggcc atggtcttca ttgaaaccca cagcctgaca atcagagttt tcctcttctt
     1321 tactctctgg atgctgacat ctcatccaga gcccacccgt cctccccaca tgcttcacat
     1381 caagtgtcag agcgtggctt gcttgggtcc catgttgagc tttctttact cacaagccaa
     1441 actgtatgcc ctcacttttt catttcctgc catgttgaca ttctgcagtc tccattgtct
     1501 cctgaaatgg gaaatttgtc cccaaggcca gtctgtccta atatttgata gttagcaggt
     1561 caccttataa tataaatttg tgagtacaga ggaaaccatc cagagtgacc cagaaggaat
     1621 gataccatgc ttctcaagac agaagaattt catggccatg ctctaaagag atctaccaac
     1681 catagtgagc cataaatgaa gaggtatgga aacagctcca gttctccaat cacaagcctc
     1741 aaatgaacat catccatggg cctattcttg gtcattggga agctgtttgg tcatgatgag
     1801 gtcaccaaag ctcatgtggc taaagtgaag tgccctggaa cagctgtgag atgtctactg
     1861 tggttgtgac tgcatcctag cccctgagac tgaactctgc agctctcatg ggcatggtga
     1921 ttttgggcat tcctggtgtg tttacacaga tggctgccaa gatgctggtc tgtccagtcc
     1981 tctcaaggag tctcatgcac ctgtaagaag gggccttaat ctatttgttc aaatggtcat
     2041 gtgacttctc aggtcctttt cctttgcata agagggaaaa tccagagata agcctacagc
     2101 aaagacttac agagccaaca ttctcatctc tgcatatgtg cttaagttca ggttgtatac
     2161 acttaggcag acttctgatc ttctgtctct gatcttccaa aagggaacat tatgttccaa
     2221 ctagaaagta gatattggct tctgccctgg tgacaaatgt ttggcattta tgttccctag
     2281 attgaaccaa ttagtaagaa aaaggactaa aagaatttgg ggatcataac attcatgtca
     2341 tcccaacaat tgacagttag tgatgggaat attatcagtt gtaacactga ttctcaacct
     2401 gtgtgtcacc acctctttga agctaggaga acattttcat aggagtcaca tttctgatat
     2461 cctgaatatc agatgtttat attatgatca taactgtatt aaaattacag tcattaaata
     2521 ccaatgaaat aattctataa ttggagtcac tccaagatga ggaaatatca gagcattagg
     2581 aagcttgaga accacagaat tagaggctat tcttggtact tcttgagttt aggccagcat
     2641 gggtcacatg agactctgtc tttaaatcaa cagcaaagct taacaaaact gaaatcagta
     2701 aagtgtgtca tgaaaaaagg ccctcactta gctccctttt ccctggagat ggagaacttg
     2761 aatatgatac ttagcttctc tctagattta tataaaatat aacgtgacta acagta
//
