LOCUS       XM_002730271            2399 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus similar to Ppnx (RGD1562521), mRNA.
ACCESSION   XM_002730271
VERSION     XM_002730271.6
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051356.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_002730271.7.
            
            On Jan 21, 2021 this sequence version replaced XM_002730271.5.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2399
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2399
                     /gene="RGD1562521"
                     /note="similar to Ppnx; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 1 Protein, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 3 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:100361639"
                     /db_xref="RGD:1562521"
     CDS             100..1890
                     /gene="RGD1562521"
                     /codon_start=1
                     /product="uncharacterized protein RGD1562521"
                     /protein_id="XP_002730317.2"
                     /db_xref="GeneID:100361639"
                     /db_xref="RGD:1562521"
                     /translation="MKALLWLYHVLCFLCYCRAVPQMSRLSASSSPLTGNMSPIYSYF
                     DIPWLASIPGNCQGIVLTPWLILSTANCLKKLKPLYLDISGVNDPESIPHGQRICLHP
                     KFNPKDENDPVEADIGLIILEEPIYGDEIPLSQFTNISLKSCSKCQYKSCYVYEYQSS
                     KKLGTTRVKKIDVQLLDFSTCHHQHSYLEKTVGLCIQSQPREDCWIQQASPVLCLLKN
                     HWELVGLIHRTSKICQNPTVIIRTTPYFTWIKRFIKASKKLLNPTSSLHCRTLYENEH
                     VPQIRHSHNYIPTLVSQNSSLGVLQRNLSTSPQTKHITNVPKIFNFSDANYFADSHRL
                     FLDKSQTPQTVKSLPVAVLPKNSGQNLIQYHEDTAPHNTNNLSKSPLSQLISDTAISY
                     TPPKTDGFKPCVSAAYNTGESFDKMMADIIKQSNPSEDDGVESANFHEGSMTENTTDL
                     DKHRNLWRMMSNGPQDQYATKSNLQPNFSLSEGEESWRLFTSGSAANKIDLPMEPLLQ
                     NDMYDMPPFESGVPKPGGIIEIWNSPEYYALSSQDQPVTVPVRAQDHPVSDANRVQIL
                     PMDSIGMPLTPKLATYESINLEAKSPPYPN"
ORIGIN      
        1 atgtcagaca ttctataacc tctgaactct gcctctagac tataagagct gctgttgcct
       61 tgggatttct acaacatact tcttgccagt tgagtcagaa tgaaggctct actttggctt
      121 taccatgttt tgtgctttct ttgctactgc cgtgctgtgc cccaaatgtc gagactgagt
      181 gcgagttcaa gcccattgac tggaaatatg tcaccaatat atagctactt tgatatacca
      241 tggctggcat ctatacctgg aaattgccag ggtattgtcc tgactccatg gctgattctt
      301 tctacagcta actgtctgaa gaaattgaaa ccgttatacc tggacatttc aggagtaaat
      361 gacccagaaa gcattccaca tggccaaaga atctgcctcc accccaagtt taatcccaaa
      421 gatgaaaatg atccagtgga agcagatatt ggcttgatca ttcttgaaga gcctatttac
      481 ggggatgaaa taccactatc tcagttcact aatatatcct tgaagagctg ttctaagtgc
      541 caatacaaaa gctgttatgt gtatgaatat cagagtagca agaagctcgg aaccaccaga
      601 gtaaagaaga tagatgtgca gcttctagat ttctcaacat gccaccacca gcattcctat
      661 ctagagaaga ctgtgggctt gtgtattcag agtcaaccac gggaagactg ctggatacag
      721 caagccagtc ctgttctatg tctcctaaag aaccactggg aactagtggg cctcatacat
      781 aggacttcaa agatatgtca aaatcccaca gtcatcatta gaacaactcc ttactttacc
      841 tggataaaac gattcatcaa ggcatctaag aagctactga atcctacttc ctctttacac
      901 tgtaggacat tgtatgaaaa tgagcatgtt ccccaaatca ggcatagcca taattatatc
      961 ccaactctgg tctcccagaa ttcctccttg ggggttttac aaagaaactt aagtacttct
     1021 ccacaaacca aacatatcac caatgtacca aaaatcttta attttagtga tgcaaattat
     1081 tttgctgata gccatagatt gttccttgat aaaagccaga ccccacaaac tgtcaagtca
     1141 ttgcctgttg ctgtacttcc aaaaaattct ggacagaatt taattcagta tcatgaggat
     1201 accgctccac ataatacaaa taatttaagt aaatctccat tatctcagct tatttctgac
     1261 acagctatat catatactcc tcctaagact gatggtttta aaccctgtgt ttctgcagca
     1321 tataatactg gtgagtcttt tgataaaatg atggcagata taattaaaca atcaaatcca
     1381 tcagaagatg atggagtgga gtctgcgaat ttccatgagg gtagtatgac agaaaatact
     1441 actgatttag ataagcacag gaatctttgg aggatgatgt caaatggacc tcaggatcaa
     1501 tatgcaacta agtccaactt acaaccaaat ttctctttat ctgaaggaga ggaatcctgg
     1561 agactcttta cttcaggttc agctgctaac aaaatagacc tgcccatgga acctctatta
     1621 caaaatgata tgtatgatat gcctcctttt gaaagtgggg ttcccaagcc aggtggtata
     1681 attgaaatct ggaattctcc tgaatactat gctctaagtt ctcaagatca accagttact
     1741 gttccagtaa gagctcaaga tcatcctgta agtgatgcta atagagtcca gattctacca
     1801 atggacagca taggtatgcc cttgactcct aaattggcta cctatgaatc gattaatctt
     1861 gaggctaaaa gccctccata cccaaattag cacagtacaa tgccatcaca aggccagtct
     1921 tcatttatgg ccatgatgca gcctatagtt gaaactgaat tccaactaaa agctgaatct
     1981 gagagagtta gacacctaga ttaatcttag cctaaagtat ctctaaggtg aagtagacat
     2041 agtaggaatt cttgtctgta tcaaagctca catattactg agacaaatta cctttagtcc
     2101 cttggaacaa cttatggcct catctcattt gaaatgccgt ttgttcttat agaatattat
     2161 gtacacactt atctcttttc aaaaagttaa aataaaaaca aattgaaaag caaatagctt
     2221 tcctgctaat tagattttgt tttgttctgt attttgtatg ttttaagagg attcttttta
     2281 cacatggatc aatttgatgt tttttttgaa agctttcatg ttgaaaatta tttcaggata
     2341 attgaagaat cacacagttt aaaaccacca ccaggggtgg gaaaggtggt taagcattt
//
