LOCUS       NM_001077678            1901 bp    mRNA    linear   ROD 07-OCT-2023
DEFINITION  Rattus norvegicus ubiquilin 5 (Ubqln5), mRNA.
ACCESSION   NM_001077678 XM_001073385 XM_574515
VERSION     NM_001077678.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1901)
  AUTHORS   Gaudet P, Livstone MS, Lewis SE and Thomas PD.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 1901)
  AUTHORS   Strausberg RL, Feingold EA, Grouse LH, Derge JG, Klausner RD,
            Collins FS, Wagner L, Shenmen CM, Schuler GD, Altschul SF, Zeeberg
            B, Buetow KH, Schaefer CF, Bhat NK, Hopkins RF, Jordan H, Moore T,
            Max SI, Wang J, Hsieh F, Diatchenko L, Marusina K, Farmer AA, Rubin
            GM, Hong L, Stapleton M, Soares MB, Bonaldo MF, Casavant TL,
            Scheetz TE, Brownstein MJ, Usdin TB, Toshiyuki S, Carninci P,
            Prange C, Raha SS, Loquellano NA, Peters GJ, Abramson RD, Mullahy
            SJ, Bosak SA, McEwan PJ, McKernan KJ, Malek JA, Gunaratne PH,
            Richards S, Worley KC, Hale S, Garcia AM, Gay LJ, Hulyk SW,
            Villalon DK, Muzny DM, Sodergren EJ, Lu X, Gibbs RA, Fahey J,
            Helton E, Ketteman M, Madan A, Rodrigues S, Sanchez A, Whiting M,
            Madan A, Young AC, Shevchenko Y, Bouffard GG, Blakesley RW,
            Touchman JW, Green ED, Dickson MC, Rodriguez AC, Grimwood J,
            Schmutz J, Myers RM, Butterfield YS, Krzywinski MI, Skalska U,
            Smailus DE, Schnerch A, Schein JE, Jones SJ and Marra MA.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     PREDICTED REFSEQ: This record has not been reviewed and the
            function is unknown. The reference sequence was derived from
            BC127523.1.
            
            On or before Nov 15, 2006 this sequence version replaced
            XM_574515.2, XM_001073385.1.
            
            ##Evidence-Data-START##
            Transcript is intronless :: BC127523.1 [ECO:0000345]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1901
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q32"
     gene            1..1901
                     /gene="Ubqln5"
                     /gene_synonym="RGD1562433"
                     /note="ubiquilin 5"
                     /db_xref="GeneID:499222"
                     /db_xref="RGD:1562433"
     exon            1..1877
                     /gene="Ubqln5"
                     /gene_synonym="RGD1562433"
                     /inference="alignment:Splign:2.1.0"
     CDS             175..1707
                     /gene="Ubqln5"
                     /gene_synonym="RGD1562433"
                     /codon_start=1
                     /product="ubiquilin-3"
                     /protein_id="NP_001071146.1"
                     /db_xref="GeneID:499222"
                     /db_xref="RGD:1562433"
                     /translation="MARAREEAGDSQLVSGRESSSRIIRVSVKTPQDCQEFFLAENSN
                     VHRFKKQISKYLHCDTDRLVLIYTGKILQDQDILSQRGILDGSTVHAVVRSRLKGSAC
                     TGTLAGPTGHCTHRSEPSVKLGRLARSSPDLADFFSQLVQLLPAAPESVVQFLEDPLI
                     QGLANEKQANGVHIPESSKTVQKRDPALKFPETFQKPVQQQEVLQEHKQRLEALKAVP
                     GGDNAMHPSCSDIQQAMLSTLASLVASKGHISGSDLCRGEANNAHSSLDTTTIPATSA
                     PVRTLAQEVSTGGVTQVKGLVSSQAGSGCRQGMLDLHPSSETPSQESQQPVEKVPLTN
                     QLRLSPSVLRRALTVLQQNPSLAHQLATGSPLLHHIPLLPILTNPRALQALLQIEEGL
                     MILSREVPELGPLFRESAKPRGARGAQETRGRRQAHREDTSQHSLAFLQLFHSLASAC
                     SQSTQTALPASPFTEDRYQQELEELKALGFANHDANLQALVATDGDIHAAIEKLLGAP
                     QD"
ORIGIN      
        1 caggtgactg tagggctaca ctggcagggg ggacctgcag gacgtaggtg aaaggacatc
       61 accgaacacc tactggtccc ttaacccagg tgtgctcagt gccacatcaa agcttccgca
      121 ggtgtgtact ccactgtacc ttcacctaac cctgcatact cttcctcagg aaatatggca
      181 cgggctaggg aagaagcagg ggacagtcag ctggtgtctg gtagagagtc atcttcacgt
      241 atcatcagag tgtctgtcaa gaccccacag gactgccagg agtttttcct ggcagaaaat
      301 agcaacgtcc accgctttaa gaagcaaatc tccaaatacc ttcactgtga cactgaccga
      361 ttggtgctca tctacactgg gaagatcctc caggatcaag acatactgag ccagcgtggc
      421 attcttgatg gctctacagt ccatgcagta gtgaggtctc gtttgaaagg gtcagcctgt
      481 acaggaactc tggcaggccc tacaggccac tgtacacacc gttcagaacc atcagtcaag
      541 cttggccggc tggctcggag ctcaccagac ctagctgatt tcttcagcca gcttgttcaa
      601 ctgctgcctg cggcacctga gtctgtggtg caattcttgg aagaccctct tattcaagga
      661 ctggcaaatg agaaacaagc caatggcgta cacattcccg agtcctcaaa gacggtacag
      721 aaacgggacc cagctctcaa atttccggaa acctttcaga agcctgtgca acagcaggaa
      781 gtcctgcagg aacacaagca gagactcgag gccctgaaag ccgtgccagg gggtgacaac
      841 gctatgcatc ccagctgctc tgatatccag caggccatgc tctccactct ggcctcattg
      901 gtggcttcta aaggccacat ttcaggctca gacctgtgta gaggagaagc caacaatgct
      961 cacagcagtt tagatactac caccattcca gccacttctg ctccggtcag gaccttggca
     1021 caagaggtca gtacaggagg agttacccag gtcaaaggcc tagtttcaag tcaggctggt
     1081 tcaggatgcc gacaaggtat gctagactta cacccaagct cagagacccc ctcccaagag
     1141 agccagcagc cagtggagaa agtccctcta accaatcagc tgagactctc accctctgtt
     1201 ctgcgccgag ccttgactgt cctgcaacag aatccatctc tcgcacacca gctggcaact
     1261 ggcagccccc tactacatca tataccgctt ctccccatcc tcaccaaccc ccgagcactg
     1321 caggcattgc tacagataga ggaaggccta atgatactgt ccagggaggt gcctgagctg
     1381 ggaccgttgt ttcgggagtc agctaaacca cgtggggcta gaggagccca agaaactagg
     1441 ggtagaagac aagcccatag agaagatacc tcacaacatt ccttggcctt tcttcagctc
     1501 ttccattcct tggccagtgc ctgttcccaa tctacccaaa ctgcactgcc cgcatccccc
     1561 ttcactgaag atcggtacca gcaagaactg gaggaactga aggccttggg ttttgctaac
     1621 catgatgcaa acctgcaggc ccttgtagcc acagatggag atatccatgc agccattgag
     1681 aagcttctag gggctccgca ggactagtct ttccatccga tgttcacgat tgcaccattc
     1741 tgtggagagg gaggaaaagg gagaagggga tggaaggcac ttattttaga aattcctctt
     1801 cctcggatta tgagcacatt tggacagccc ttctctcact gcccaaacct gttctacatt
     1861 aaagaagatt gcttggaaaa aaaaaaaaaa aaaaaaaaaa a
//
