LOCUS       XM_039113046             877 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus similar to hypothetical protein
            (RGD1562420), mRNA.
ACCESSION   XM_039113046
VERSION     XM_039113046.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051341.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039113046.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 28% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..877
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="6"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..877
                     /gene="RGD1562420"
                     /note="similar to hypothetical protein; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 2 ESTs, 16 Proteins, and 53% coverage of the annotated
                     genomic feature by RNAseq alignments"
                     /db_xref="GeneID:314532"
                     /db_xref="RGD:1562420"
     CDS             1..798
                     /gene="RGD1562420"
                     /codon_start=1
                     /product="60S ribosomal protein L19-like"
                     /protein_id="XP_038968974.1"
                     /db_xref="GeneID:314532"
                     /db_xref="RGD:1562420"
                     /translation="MCGLLWCVLTCVLLQSEDHWIEGWVWKYSLWAHRRNDPVPFTRQ
                     IPTAACNLASLPSQHYLKMIKKSIKIHPFLSLLHLLRLQKRLASSVLCCGKKKVWMDP
                     HETNEIANANSRQQIRKLIKDGLIIRKHVPVHCRCRKNTLARRKGRHMGIEKWKGTAN
                     ARMPEKVTWILRRLLRRYRESKKIDCHIYHSLCLKVKGNVFKNKRILMEHIHKLKADK
                     TRKKLLADQAEARRSKTKEARKRREERLQAKKEEIIKTLSKEEETKK"
ORIGIN      
        1 atgtgtggcc tgctgtggtg cgtgctcacg tgtgtccttc tgcaaagcga ggaccactgg
       61 attgaaggat gggtgtggaa atattcctta tgggcccata gacgaaatga tcccgtgcct
      121 tttacacggc agattcccac tgctgcctgt aatttagcgt ctctgccatc tcagcattac
      181 ctaaagatga ttaaaaagag cataaagatc cacccattcc tttcgctgct gcatctgctc
      241 agactacaga agaggctcgc ctctagtgtc ctctgctgtg gtaaaaagaa ggtctggatg
      301 gaccctcatg aaaccaacga aatcgccaat gccaactccc gtcagcaaat caggaagctg
      361 atcaaagatg gcttgatcat ccggaagcat gtgcctgtcc attgccgatg ccggaagaac
      421 accttggccc gacggaaggg caggcatatg ggcatagaga agtggaaggg tactgccaac
      481 gctcggatgc ccgagaaggt gacctggatc ctgcgccggc ttctcaggag ataccgggaa
      541 tctaagaaga ttgactgcca tatatatcac agcctgtgcc tgaaggtcaa agggaatgtg
      601 ttcaaaaaca agcggattct catggagcac atccacaaac tgaaggcaga caagacccgc
      661 aagaagctac tggctgacca ggctgaggct cgcaggtcta agaccaagga agcacgaaag
      721 cgccgggagg agcgcctcca agccaagaag gaggagatca tcaagactct gtccaaggag
      781 gaagagacca agaaatgaag cttccctcgt gtctgtacat agtggccagg ctgtggcctc
      841 acgtggatca gtcattaaaa taaaacaagc ctttgtc
//
