LOCUS       XM_039090102            1629 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus similar to family with sequence
            similarity 55, member C (RGD1562319), mRNA.
ACCESSION   XM_039090102
VERSION     XM_039090102.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051347.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039090102.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1629
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="12"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1629
                     /gene="RGD1562319"
                     /note="similar to family with sequence similarity 55,
                     member C; Derived by automated computational analysis
                     using gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 Protein, and 42% coverage of the
                     annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:498165"
                     /db_xref="RGD:1562319"
     CDS             1..1629
                     /gene="RGD1562319"
                     /codon_start=1
                     /product="NXPE family member 3-like"
                     /protein_id="XP_038946030.1"
                     /db_xref="GeneID:498165"
                     /db_xref="RGD:1562319"
                     /translation="MGQFKDYKILTVGLVFLLLAFWLTTTWHEPIIRLLPPPRPVSED
                     VSETIDRDSVPQELFNLTSLVYWPPTGGDRDDFLASTSPRTSTYHLKGPAQANYTLGS
                     NLEAILVARDHWGRPKAHGGDLFRAQLLGPELRAGVPGEVKDLENGTYLLSFPLLWAG
                     WAQVQVRLIHSSEAVGVLQRVWRGKRATVDFRGHFRGTNGIQETVICNVDPQSTGAKG
                     STCHYKDVVSGEIWFCAQPRTLPCNALVGHSSGSYLKVTTPHDQDLLAGNVTDQKLPS
                     SLPPILVLPAAWGNMSNMALPSRPPCLPGHLSPKPSGFYHQDRWHSTFCSSRSFPTVD
                     SILNCLAGRIVYMMGDSTLRQWWEYLRDTVPSLKPVDLHATYEVGPLMAVETTRGTVL
                     HWRAHSWPLRSRLTPVASLHSVARELYGLAGGPYTVVVLGMGAHFTTFPPSIFARRLA
                     GIRAAVKALLDREPSTLVVIKLANTGYKSVYGSDWLTLQMNRFLRAAFVGLRVAFVDA
                     WEMTSSLAVPDNIHPRKLIVRNEVELFLSFICPT"
ORIGIN      
        1 atggggcaat tcaaggacta caagattctg accgtgggct tggtctttct gcttttggcg
       61 ttctggctca cgaccacttg gcatgagccc ataatccggt tgctcccacc accccgtcct
      121 gtctctgaag atgtctcaga gaccatcgac agggactctg tccctcaaga actcttcaac
      181 ttgactagcc ttgtatactg gcctccaact gggggagata gggatgactt tctggcctct
      241 accagcccca gaacctctac ctaccacttg aagggtcctg cccaggccaa ctatactctg
      301 ggaagtaacc tagaggccat ccttgtggct cgggatcact ggggtaggcc caaagctcat
      361 ggtggagatc tgtttcgggc acagctgctg ggtccagaat tgagagcagg agtcccaggg
      421 gaggtgaagg atctggagaa tggcacttac ctcttgtcct tccccctgct ctgggctgga
      481 tgggcccagg tgcaagtgag actgatccac tccagtgagg cagttggggt cctgcaaaga
      541 gtctggagag gaaaacgagc cactgttgat tttagagggc atttccgagg aacaaatggc
      601 attcaagaga ctgtcatctg taatgtggac ccccagtcaa ctggagccaa agggtctacc
      661 tgccattaca aggatgtggt ttctggggag atctggttct gtgctcaacc ccgtactttg
      721 ccttgcaatg ctttagtggg tcactcgagt ggaagttatc tgaaggtgac cacgccacat
      781 gatcaagacc tgctggctgg gaatgtgact gaccagaaac tcccttcaag cttacctcca
      841 atccttgtcc taccagcagc ctggggaaac atgagtaaca tggccctgcc ctcaaggccc
      901 ccatgtctcc ctggccacct atctccaaaa ccctctggct tctaccacca agacagatgg
      961 cattcgacat tctgttctag ccgctctttc cccactgtgg acagtatcct gaactgcctg
     1021 gcaggacgca ttgtctacat gatgggggat tccacactcc ggcagtggtg ggagtatctg
     1081 cgagacacag tgccctccct gaagccagtt gatctacatg ccacttatga agtaggtccc
     1141 ctgatggccg tggagacaac tcgggggacg gtgttgcact ggagggcaca cagctggccc
     1201 ctgcgctctc gtctcacccc agtggcctcc ctgcactctg tggccagaga actatatggc
     1261 ctggccgggg gaccctacac agtggtggtg ctgggtatgg gagcccactt caccacgttc
     1321 cctccctcca tctttgcccg aagactggca gggattcggg cagctgtgaa ggccctgctg
     1381 gaccgggaac ccagtactct ggtcgtcatc aaactggcca acactggcta caaatcggtg
     1441 tatggcagtg actggctcac actccagatg aaccgcttcc tccgcgctgc ctttgttggt
     1501 ctccgcgtgg cctttgtgga tgcctgggaa atgacctcca gcttggctgt gccagacaac
     1561 atccacccaa ggaagcttat tgtccgcaat gaagtggaat tatttctgtc cttcatctgt
     1621 cccacctga
//
