LOCUS       XM_039078193            1934 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus similar to taube nuss (RGD1562299),
            mRNA.
ACCESSION   XM_039078193
VERSION     XM_039078193.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051341.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039078193.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1934
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="6"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1934
                     /gene="RGD1562299"
                     /note="similar to taube nuss; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 8
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:299169"
                     /db_xref="RGD:1562299"
     CDS             220..1146
                     /gene="RGD1562299"
                     /codon_start=1
                     /product="transcription initiation factor TFIID subunit
                     8-like"
                     /protein_id="XP_038934121.1"
                     /db_xref="GeneID:299169"
                     /db_xref="RGD:1562299"
                     /translation="MADPAARPGGSRTRAGNKQSTNPADNYHLARRRTLQVVVSSLLT
                     EAGFESAEKASVETLTEMLQSYLSEIGRSAKSYCEHTARTQPTLSDIVVTLVEMGFNV
                     GILPAYAKRSQRMVITAPPVTNQPVTPKALTAGQNRPHPPHIPSHFPEFPDPHTYIKT
                     PTYREPVSDYQVLREKASSQRRDVERALTRFLAKTGETQNLFKDDVSTFPLIAARSFT
                     IPYLTALLPSELEIQQMEEMDSLEQDEQTDTENIALHISSDESGAEKENTSVLQQNSS
                     LSGSRNGEENIIDNPYLRPVKRPKIWRKKSLS"
ORIGIN      
        1 agcagctgct tcctgcttct caagattgtt taactttatg gtcggctagt tcctaggaga
       61 agctgcttga acaagcagat gtaattacct attctatagc cctaggagag gatttctgga
      121 atgtacaatt ctgaggccta accagtttct tctgttctaa actttgtgtc tagggggggc
      181 aactttaaaa tttttaactt gacactacgc tagagcaaga tggctgaccc ggcggcccgg
      241 cctggtggct ccagaacgag agcaggaaat aaacagtcca ctaaccctgc tgataactac
      301 cacctggccc gcaggaggac cctgcaagtg gttgtgagct ctttgctgac agaggcggga
      361 tttgagagcg cggagaaagc gtctgtggag acgttgacag agatgttaca gagctacctc
      421 tcagaaatag ggagaagcgc caagtcatac tgcgagcaca cagccaggac ccagcccaca
      481 ctttcagaca tcgtggtcac actggttgaa atggggttca atgttggcat tctacctgct
      541 tatgcaaaac ggtctcagag gatggtcatc actgcacctc cggtgaccaa tcagccagtg
      601 acacccaagg ccctcactgc agggcagaac cgaccccacc cgccacacat ccccagccat
      661 tttcctgaat ttccggatcc ccacacgtac atcaaaacac cgacgtaccg cgagccagtg
      721 tctgactacc aggtcctccg agagaaggcc tcatctcaga ggcgggacgt ggagcgagca
      781 ctcacccgct tcttggccaa gacaggcgag acccagaatc tcttcaagga tgatgtcagc
      841 acttttccct tgattgcagc cagatctttc accatcccct acctcacggc cttgcttccc
      901 tctgagctgg agatacagca gatggaagag atggactcct tggagcagga cgagcaaaca
      961 gatacagaga acatcgcgct tcatatcagc tcggacgaat ccggagctga gaaggagaat
     1021 acttctgtcc tgcagcagaa ctcctccttg tccggcagcc ggaacgggga ggagaacatc
     1081 atcgataacc cctatctgcg gcccgtgaag aggcccaaga tctggaggaa gaagtccctc
     1141 tcgtgacctc agaaggaagc cgccctgtaa aggggagaac actgctttcc tgggggagtg
     1201 gaaccacaga gggaagagga gggggcgtcc gtcctctggc catgtccagg ccatgccatt
     1261 tagtagcatc tttctctgaa gacagcctgt tgtgcttgag tgtgtggagg aaaccatagt
     1321 gcaacagggc caggactgct ggtgactcca ttgatcaatc atgggacgtg attcctttgg
     1381 aactggagag ctatggaaga gccagaaaga aggctcatgt ctctctggct tgccgagaag
     1441 acagccaagt gtatcttcca gacctctcag atccctgacc atataaaccc atcaagttct
     1501 cccttctcac ctaggcccca aggtcctggc tgagcagatg gaaagtgact ttgtagctca
     1561 ccgtgttgga aacaggccca cagctcacct ctgatgtagg gctgccagaa gctaggagca
     1621 caggagtcag tatcaatgac agtggtcatg gggcagcact tgattagagc tgaccacaat
     1681 gaaggtgaag cacccttctg ggaaagctgg tctgaccaga ggctgggata gagttagcta
     1741 tcctgtgact taaaaagggg ccgtggattt caggcaccac gaagaggact tagcaggtag
     1801 gagaggactg agcttagctg agaaagccag ctgtggtaga aagctcactt gcctgtggga
     1861 ggggctgaga ggaccctgct gaggcatcgg gatccgccct ccactacctc cctggagaga
     1921 agacaccact ctac
//
