LOCUS       XM_039087377            1883 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus similar to TAF11 RNA polymerase II,
            TATA box binding protein (TBP)-associated factor (RGD1562272),
            mRNA.
ACCESSION   XM_039087377
VERSION     XM_039087377.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051345.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039087377.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1883
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1883
                     /gene="RGD1562272"
                     /note="similar to TAF11 RNA polymerase II, TATA box
                     binding protein (TBP)-associated factor; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 5 ESTs, 3 long SRA reads, 6 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:303433"
                     /db_xref="RGD:1562272"
     CDS             741..1364
                     /gene="RGD1562272"
                     /codon_start=1
                     /product="transcription initiation factor TFIID subunit
                     11-like"
                     /protein_id="XP_038943305.1"
                     /db_xref="GeneID:303433"
                     /db_xref="RGD:1562272"
                     /translation="MENLGESPTDKGGESEESRATPGNPLAADTEGIPEETDRDGDVD
                     LKEAAAEERETKSQDVSGLTAVEREDSFLTPAAKKLKLETKDKKEKKQKVDEDEIQKM
                     QILVSSFSEEQLNRYEMYRRSAFPKAAIKRLIQSITGTSVSQNVVIAMSGISKVFVGE
                     VVEEALDVCEKWGEMPPLQPKHMREAVRRLKSKGQIPSSKHKKITFF"
ORIGIN      
        1 acgaagtggg cacacttgta ggagcttccc gaagtgctcg ccttcccaaa gatttgggaa
       61 cctcatggga ctggaaatga tcctcattgg tccaggcact gtagaaacaa aagaaatgtg
      121 ggaacgggat actagctctg ttctgacggg aggcaggtag ccaatagttg aagcattgaa
      181 tgaaatcgtt ggatatattc tattggcact agagatgctt gcggtacaga agagaagccc
      241 aagcagttcc ctggtggacc caagccgcgg atctcagttc tttggaaaat acgaggttga
      301 gtctctgccg gaaattgctc agtccaaggc agcaacaagc agccggacgg agttttcgcc
      361 ccgttccgga ctttgcgctc aagttaacgg attaattggc attacatttc caggaaggaa
      421 ggaaaaaaag aagtctctcg gtaaacgaat tgtacgccct ttcgaacacg cttctaccct
      481 aaagcggagg atctatactt ttacatttct ttctggttaa aacaaagtca gtatacaaga
      541 agaccctgag cgatcgagac tctgaaaatg acccctccca ggagccgtgg gcgtgacgtc
      601 atcgcggcgc gaccacaagc aataaggacc agctccaagc cataagcctc agctataata
      661 taagtcccgc ggcaaaactc gctgaccctc actccttcgc ccggccgcgc tgccttcgcc
      721 tctaaccccc tcctgtcgcg atggaaaacc ttggagagtc gcccacggac aaaggcgggg
      781 agtcagagga gtcgagggct actcctggga acccgttagc ggcagacact gagggaatcc
      841 ctgaggaaac cgatagggat ggagacgtgg acttgaaaga agccgcggca gaggaaaggg
      901 agaccaagag tcaggatgtc tcaggtttga cagcagttga gagggaagac tcatttctta
      961 ctcctgcagc caaaaagctg aaactagaaa ccaaagacaa gaaggagaag aagcagaagg
     1021 tggacgaaga tgagattcag aagatgcaaa tcctggtctc ttctttttct gaagagcagc
     1081 tgaaccgtta tgaaatgtat cgccggtcag ctttcccgaa ggcagccatt aaaaggctga
     1141 tccagtccat cactggcacc tctgtgtctc agaatgttgt gatcgccatg tctggcattt
     1201 ctaaagtttt tgtcggggag gtggtagaag aagccctgga tgtgtgtgag aaatggggag
     1261 aaatgccacc cctgcagccc aagcacatga gggaggccgt gcggaggttg aagtccaagg
     1321 ggcaaatccc cagctcaaag cacaagaaaa tcaccttctt ctagatctaa cagagactgt
     1381 tcaagacttt ccgtatagtt gggcttctgt actgaggctt tgttggtggt gagcccagga
     1441 cacttgatgc tgactttaat gtttctgtta cacctacaag gcacgtagtg tgcctcagac
     1501 ttgccttcac tcagtcatag actgtcctca ggcatgttga agaatttcac agactcttgg
     1561 ctatttttaa gaaaaaatac acagggactg ttagtatctc ctggagaggg agatgatttc
     1621 agagaaaaac aagacaacta cagtttcaca ttgaagccta aagtggctaa gattcaggtt
     1681 gtttcgaaac aaactttctc aataatctgc tgtgaagaca gtcacaccat aattcgattc
     1741 tcaccgttaa catttcaggt tgtcctgtgt attttgtgag ggattattaa acttttccaa
     1801 cctgtgtggg aaactttgtt ttattttgtt gcagacaaaa cttattgtcc ttccaataaa
     1861 acttggattt tttttccttg ttt
//
