LOCUS       XM_017597742            1051 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus similar to MAIR-IIb (RGD1562156),
            transcript variant X1, mRNA.
ACCESSION   XM_017597742
VERSION     XM_017597742.2
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051345.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_017597742.3.
            
            On Jan 21, 2021 this sequence version replaced XM_017597742.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1051
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1051
                     /gene="RGD1562156"
                     /note="similar to MAIR-IIb; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 8
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 15 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:501740"
                     /db_xref="RGD:1562156"
     CDS             170..808
                     /gene="RGD1562156"
                     /codon_start=1
                     /product="CMRF35-like molecule 5"
                     /protein_id="XP_017453231.1"
                     /db_xref="GeneID:501740"
                     /db_xref="RGD:1562156"
                     /translation="MWQISALLFLFLPGYSTAQDLLIGPEKVSGQEQGSLTARCQYAS
                     HWKDYSKYWCRGSSWHLCGILVETDASERLVKKNRVSIRDNQTHFIFTVTMEDLRMSD
                     ADIYWCGITKVGYDLMSKIHLSIDPGWSPGSSKKILEPTRSSPVDTQPGVTTNDTIPA
                     SSPRYILGSLYLCILVFLELPLFLCMLCAVLWVNRPQTWSGRQGIQPYYENQ"
ORIGIN      
        1 tcaaagactg acatcatctt tcttcctgtg tgcaaaattg agaagttctg tcaaggaagt
       61 taatgagtga agtggacaag agagacctaa aggaaactca agctgagctt caagtccttg
      121 cagggtgctg gcatttgtca cctccaagga caggagaggg gaccacacca tgtggcagat
      181 ctctgctctg ctcttcctct tcctcccagg ctactccact gctcaagatt tactcatagg
      241 accagagaaa gtgagtggtc aggagcaggg ctccctgacc gcgcggtgcc aatatgcctc
      301 acactggaag gattacagca agtactggtg ccgaggatct agttggcatc tctgtgggat
      361 cctcgttgaa accgatgcat cagagcggtt ggtgaagaag aaccgtgtgt ccatcaggga
      421 caaccagaca cacttcatct tcacagtgac catggaggac ctgaggatga gcgatgctga
      481 catttactgg tgtggaatta caaaagttgg atatgatctt atgtctaaaa ttcatttgag
      541 cattgaccca ggttggagcc ctgggagcag taaaaaaatt ctggagccca ccagatcctc
      601 accagttgac actcagcccg gcgtgaccac aaatgacaca attcctgctt ccagcccacg
      661 gtacattctg ggcagcctct acttatgcat cctggtgttt ctggagttgc ccctgttcct
      721 gtgcatgctc tgtgccgtcc tgtgggtgaa caggcctcag acgtggtctg ggagacaagg
      781 cattcagccc tattatgaga accagtgaag tctgttgaca tggaggccct gtccctggat
      841 gcatcactct ggtggccaag gacaaccagt aaacctgtgt tcttgagaat gctctgacac
      901 tctgcacgtg tcaaacacat aaagaatgtg ccctaggggc tggggattta gctcagtggt
      961 agagcgctta cctaggaagc gcaaggccct gggttcggtc cccagctccg aaaaaaagaa
     1021 ccaaaaaaaa aaaaaaaaaa aagaatgtgc c
//
