LOCUS       XM_039100402            1029 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus similar to MGC82337 protein
            (RGD1562039), transcript variant X1, mRNA.
ACCESSION   XM_039100402
VERSION     XM_039100402.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051356.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039100402.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1029
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1029
                     /gene="RGD1562039"
                     /note="similar to MGC82337 protein; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 3 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:367869"
                     /db_xref="RGD:1562039"
     CDS             170..463
                     /gene="RGD1562039"
                     /codon_start=1
                     /product="SH3 domain-binding glutamic acid-rich-like
                     protein 3"
                     /protein_id="XP_038956330.1"
                     /db_xref="GeneID:367869"
                     /db_xref="RGD:1562039"
                     /translation="MSKIIIYYASVSGSREIKQRQEEVMRVLDIYKIKYELIDIAVST
                     EVLEEMRTKVASPKAIPPQIFNGQEYCGDFIRFHDAKENKEILKFLKMESEFS"
ORIGIN      
        1 tagccaatct cgaatgcagt cccttagcaa ccctcagaga gaaagaaaag cttagccctg
       61 ctccatgttc agacttcagg aaaccggtaa caagaaagag agttgactgg aatgcagcgg
      121 ttaagtcttc gccccaatac atttgaagag caactgcagt ctgaaaacca tgagtaaaat
      181 tataatttac tatgccagcg tgtcaggctc tagggagata aaacaaagac aagaagaagt
      241 tatgagagtt ttagacattt ataaaattaa gtatgagtta attgatatag ccgtcagtac
      301 cgaagttctg gaagaaatgc gtactaaggt tgcctctccc aaggctattc cacctcagat
      361 attcaacgga caagaatatt gtggcgattt catacgtttc catgatgcca aggagaacaa
      421 ggaaattctg aagttcctga agatggagtc tgagttttca tgatggtctt ggtgatttct
      481 ccccacctga atgtagcttc actttccttt cggattcagg caacacttca aaatgtccca
      541 tggctccaaa gaaaataaat gaagatcacc caagaagaac aatagaagcc tgattattca
      601 gaacttgtta gaagttaggc atcatcacta gtattttgca gagactgtca aaggcaggca
      661 aaagaatggg aagttttaca aacgaaagac atcagataat ttaatgaacc aagtgcatca
      721 tagcattgat ttccaagcat ctttataagc acgaaacaga agaaaagtca gagaggaaga
      781 gaagaattaa agagacagaa tgaactgact gctgtaccaa cagaagctaa aagcaggaga
      841 agaatctcct tttcctgtgg tcttgatggg gcatactact tttcatcttc tttccttcag
      901 aacgctaaaa gcaatgtctg ctctctttag ttaccttgtt tgtgcctctc ccattgtttt
      961 tcaaattcac agtaagctgt tacatcttcg aactgtaatc tcttaaaata aagagaggaa
     1021 taatccaaa
//
