LOCUS       XM_039078182            1150 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus similar to craniofacial development
            protein 1 (RGD1561890), transcript variant X1, mRNA.
ACCESSION   XM_039078182
VERSION     XM_039078182.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051341.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039078182.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1150
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="6"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1150
                     /gene="RGD1561890"
                     /note="similar to craniofacial development protein 1;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 1 long SRA read, 5 Proteins, and 95%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:313982"
                     /db_xref="RGD:1561890"
     CDS             45..932
                     /gene="RGD1561890"
                     /codon_start=1
                     /product="craniofacial development protein 1-like isoform
                     X1"
                     /protein_id="XP_038934110.1"
                     /db_xref="GeneID:313982"
                     /db_xref="RGD:1561890"
                     /translation="MGELDSEDFSTSDEDEDYVSSGGEYSEDDVNESVKEDEVDGEER
                     AEKTKGKRRKAQSIPARKRKQSGLSLDEEDDGREDSGGGSSEEDEEEQEGGLGSENAR
                     KKKDDELWASLLNDVGPKSKAAPSSQVKVAAETEGTSSSEPLVKAGELEKPKESEKVT
                     ITTVFDFAGKEVRVTKEVDATSKEAKSLLKQTEKEKPQALVTSAETPLPAGSGIKRTS
                     GMSSLLGKIGAKKQKMSTLEKSKLDWESFKEEEGIGEELAIHNRGKEGYIERKAFLER
                     MDHRQFEIERDLRLSQMKP"
ORIGIN      
        1 agtggccgca gtcgtgttgg tagcaggccc caagtgacag cagcatggga gaactcgact
       61 ctgaagactt ctccacgtcg gatgaggatg aggactacgt gtcatcgggt ggcgagtaca
      121 gtgaagatga tgtcaatgaa tcggtgaagg aagatgaagt ggatggtgaa gagcgggctg
      181 agaaaaccaa agggaaaaga aggaaggctc agagcattcc agccaggaag agaaaacaaa
      241 gtggcctctc gttagacgaa gaggacgacg gcagggaaga ctctggaggt ggcagtagtg
      301 aagaagatga agaggagcaa gaaggaggcc tcgggtcaga gaatgcaagg aagaagaagg
      361 acgatgaact gtgggccagc ctccttaatg atgtaggacc aaagtcaaaa gcagccccaa
      421 gttcacaagt caaggtagca gcggagactg aagggactag ttcaagtgaa ccattggtga
      481 aagcaggtga actagagaaa cctaaagaat cagaaaaggt gacgattacc acggtgtttg
      541 actttgctgg caaagaggta agggtgacta aggaagtaga tgccacatct aaggaagcca
      601 agtctctcct caagcaaaca gagaaagaaa aaccacaggc tcttgtcact tcagcagaga
      661 caccactccc tgctgggtca gggataaaaa gaacaagtgg gatgagcagc cttttaggaa
      721 aaattggagc caagaaacag aaaatgagca cccttgagaa atccaaattg gactgggaga
      781 gcttcaagga agaagaaggg attggtgaag agctggccat ccataaccga gggaaagaag
      841 ggtacatcga acggaaagct tttctggagc gcatggacca caggcagttt gaaattgagc
      901 gagatctcag gctgagccaa atgaaacctt gacgttctgg ggagaattcg tagcagctta
      961 attctgttaa caacgtgagc tcttccgtgt gtctgtgaaa tctccagtga tcttcgtcgt
     1021 gtttccagca agtccatttt tctacattgc agtttggtta atgtatctta atctcacctg
     1081 gtttcatttt actttttaaa atttgttttt aaataaacaa atagaagccc tctgtgaggt
     1141 tggtgaaagg
//
