LOCUS       XM_039088746            2073 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus similar to SET domain-containing
            protein (RGD1561853), mRNA.
ACCESSION   XM_039088746
VERSION     XM_039088746.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051346.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039088746.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 13% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..2073
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="11"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2073
                     /gene="RGD1561853"
                     /note="similar to SET domain-containing protein; Derived
                     by automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 EST, 14 Proteins, and 91% coverage of the annotated
                     genomic feature by RNAseq alignments"
                     /db_xref="GeneID:288346"
                     /db_xref="RGD:1561853"
     CDS             1..1227
                     /gene="RGD1561853"
                     /codon_start=1
                     /product="N-lysine methyltransferase KMT5A-like"
                     /protein_id="XP_038944674.1"
                     /db_xref="GeneID:288346"
                     /db_xref="RGD:1561853"
                     /translation="MPCVNIDFRPATSAFLKKSEEKIHPAFQGPASCREAGRRAGPGL
                     VPANHSGQLRKERATAPISTHSRCLAEQLATVVATFFESSVSQEIPGGDRAGPWLEEN
                     GFAGQSNIYAYRSPNKCPGMRSPLQEENSVAHHEVKCPGKPLAGIYRKGEEKRNAGNV
                     IRSAVKSEEQKSKDTRRGPQAPFRNQKSEATEPPKTPPPACDSTSVAVAKQALKKPLK
                     GNQAPRKKSQGKTQQNGKLTDFYPVRRSSTKSKAELRSEERKKIDELIESGKEEGMKI
                     DLIHGKGRGVIATKRFSRGDFVVEYRGDLIEITDAKKREALYAQDPSTGCYVYYFQYL
                     SKTYCVDATQETNRLGRLINHSKCGNCQTKLHDIDGVPRLILIASRDIAAGEELLYDY
                     GDRSKASIEAHPWLKH"
ORIGIN      
        1 atgccgtgtg tgaatattga tttcagacct gccacatcag cctttctaaa gaagagtgaa
       61 gagaaaattc acccggcatt tcaaggccca gcctcctgca gagaggcggg gagaagggcg
      121 ggccctggcc tcgtgcccgc caatcacagc gggcagctcc ggaaagagcg ggcgaccgcg
      181 ccaatcagca cccacagccg ctgtctagct gagcagttgg ctacagttgt tgcaactttt
      241 ttcgaaagct ctgtttccca ggagattcca ggcggtgaca gagcggggcc atggctagag
      301 gagaacgggt ttgctgggca gtcaaatatc tatgcctaca ggagtccgaa caaatgcccc
      361 ggaatgcgct ctccactgca ggaagagaac tcggtcgcac atcatgaggt caaatgcccg
      421 gggaaaccat tggccggaat ctacaggaag ggagaagaga aaagaaacgc tgggaatgtt
      481 atccgaagcg ctgtgaagtc agaagaacag aagagcaaag ataccaggag aggtccccag
      541 gcgccttttc gaaaccaaaa atctgaagca acagaacctc caaaaactcc acccccggca
      601 tgtgattcta caagtgtagc agttgctaag caagccctga aaaagcccct caagggcaat
      661 caggcccctc ggaagaagtc tcaagggaag acacagcaga atggaaaact cacagatttc
      721 taccccgtgc gaaggagctc cacgaagagc aaagctgagc tgcggtctga agaaaggaag
      781 aagatagatg agctaattga gagcgggaag gaagaaggca tgaagattga tctaatccat
      841 ggcaaaggca ggggtgtgat tgctaccaag cgattctccc gaggagactt tgtggtagaa
      901 taccgtggag acctcattga aatcaccgat gccaagaagc gggaggctct gtacgcacag
      961 gacccctcca cgggctgcta cgtgtactat tttcaatatc tgagcaaaac ctactgcgtg
     1021 gatgccactc aagaaacgaa ccgcctgggg aggctgatca atcacagtaa gtgtgggaat
     1081 tgccagacca aactgcatga catcgacggc gtgcctcgcc tcatcctcat agcctcccga
     1141 gacattgcgg ccggggagga gctcctgtac gactatggag accggagcaa ggcctccatc
     1201 gaagcccacc cttggctgaa gcactaacca accatgtggc ctccctgcct ccctccctgc
     1261 caccctgcct ccttcaaagg acaaagtgcc ctcaaaggga aatgaatttt acacacacac
     1321 acacacacac acacacacac acacacacac acacatacac acacacacat tcactcttac
     1381 tcttagctaa ttacttcaaa tgttttttaa aagtatatta aagatgcctt ttcatgtagt
     1441 atttaaatat ctgttacagg tttccaaggt ggacttgaac agatggcctt atattaccaa
     1501 aacttttata ttctagttgt ttttctacct ttttgcatac aaactgaacg tttgtgcttc
     1561 ccgcgcagtg taagactccg cacaggtttt agagaatgga gttgaacatg aactaggaag
     1621 ccaggctctg cccaagatga aagccaggac tccccagcac cccacgtctg aggacaggcc
     1681 aatgtgaggg tgctgccacc cccatgcaca gcctcgacgg gatgtctcca acctcttgtt
     1741 ctcctcagcg tcttgacagg tgtacacatt gacgtgtatg aatatttttt agcaaaagtt
     1801 tcacagtaag ctagtcttcc cctctgcttt ctccaaagct tactgagccc agggctcgga
     1861 ggcccggcca ggaacagact tcttccacag gcttgcggct tttccaggca ccttgaagca
     1921 tcagggtggg cagtcagact agaggcaggc cgggaaaagc actgttctcc tgcccaagaa
     1981 gggcaggtct cctgaaactg cattaattct ttatagaaat gtgaacaccg aatttatttt
     2041 aaaaaataat aaaaaaacaa aatagtaaaa aaa
//
