LOCUS       XM_008769088            1272 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus similar to cell surface receptor
            FDFACT (RGD1561730), transcript variant X1, mRNA.
ACCESSION   XM_008769088
VERSION     XM_008769088.3
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051347.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_008769088.4.
            
            On Jan 21, 2021 this sequence version replaced XM_008769088.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1272
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="12"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1272
                     /gene="RGD1561730"
                     /note="similar to cell surface receptor FDFACT; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 2 Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 34 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:498169"
                     /db_xref="RGD:1561730"
     CDS             229..984
                     /gene="RGD1561730"
                     /codon_start=1
                     /product="paired immunoglobulin-like type 2 receptor beta
                     isoform X1"
                     /protein_id="XP_008767310.1"
                     /db_xref="GeneID:498169"
                     /db_xref="RGD:1561730"
                     /translation="MARILLLLLSAACLHTGNSAGYQKKYDYAVDQPAVLSGVQGGSI
                     EIPFSFYFPWELANDRPMSIAWRWKHFHGEFIYNSTQPFIHEHFKGRLIMNWTQGQTS
                     GVLRILNLKENDQATYFSRVFLQTTEGMKLWQSIPGTQLIIHGTKRIWVLCVAALFPS
                     SFPCCSPQPYFFKSFSTTLGSPSIIPSAVPTTGLEDTRGQRNPSLLNLGAMVGMVVSK
                     VVVIIPLYGWVIFLWSKQRPAEERLNPSKAPQC"
ORIGIN      
        1 cttttgcaac atcggaaaag aagcagccag atcagtaaag gaagttgctg gccacaagga
       61 ggtagagatg gtcgtgccca actcagactt cccctggaga atgtctgagc atgtgttttt
      121 atttaccctg attctctctg gactgctgag tgccccagtg tccgtagtca gggcaacctc
      181 gacttcctga cggccctgct ggtctcactt cctgaacaga atctggctat ggctcggatc
      241 ctccttcttt tgctgtcggc agcatgtctg cacactggga actcagcagg atatcaaaaa
      301 aagtatgact atgctgttga ccaaccagct gtcctctctg gagtccaggg tggctccatc
      361 gagatcccct tctctttcta cttcccctgg gagttggcca atgatcggcc gatgagcata
      421 gcctggagat ggaagcactt ccatggggaa ttcatctaca actcgaccca gcctttcatt
      481 catgagcatt ttaagggccg gctcatcatg aattggacac agggtcagac atctggagtc
      541 ctcagaatcc tgaacttgaa ggagaatgac caggccacat acttcagccg agtttttctg
      601 caaacaacag aaggcatgaa gttgtggcag tcaatccctg gcactcaact catcattcat
      661 ggaaccaaga gaatctgggt cctgtgtgtt gctgcattgt ttccttcctc ctttccctgc
      721 tgctccccac aaccctactt ttttaaatct ttcagtacta ccctggggag cccctccatc
      781 atcccctctg cagttcccac aactggcctg gaggacacaa ggggccagag gaatccttca
      841 ctgctgaact tgggagccat ggttgggatg gttgtgtcca aagttgtggt catcatcccc
      901 ctctatggat gggtgatctt cctgtggtcg aagcaaaggc cagcagagga aagactaaac
      961 cctagtaagg ctccccagtg ctagaatctc tcaccaagga ggcaagttta catcaaagta
     1021 gttgttggtg attacacacc ctgcatccca cagccttcca tgtcttctcg ctgggagtca
     1081 gagatcatgg ctgcaggatt ctcttgtgaa aatcattctt ggataacctc cagttttgcc
     1141 atgggggctc ggataccttc tcctggaacc aaggtcctcc tgtgtgtctc tgggcctgag
     1201 agcctgactg tgctgttgtc tccatgctca tggagttatt gacactgtta ataaatatct
     1261 tactcccatc aa
//
