LOCUS       XM_039092811            1034 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus similar to High mobility group protein
            2 (HMG-2) (RGD1561694), mRNA.
ACCESSION   XM_039092811
VERSION     XM_039092811.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051349.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039092811.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1034
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="14"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1034
                     /gene="RGD1561694"
                     /note="similar to High mobility group protein 2 (HMG-2);
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 18 Proteins, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:498388"
                     /db_xref="RGD:1561694"
     CDS             93..722
                     /gene="RGD1561694"
                     /codon_start=1
                     /product="high mobility group protein B2-like"
                     /protein_id="XP_038948739.1"
                     /db_xref="GeneID:498388"
                     /db_xref="RGD:1561694"
                     /translation="MGKGDPNKPRGKMSLYAFFVQTCREEHKKKHPDSSVNFAEFSKK
                     CSERWKTMSAKEKSKFEDLAKSDKARYDREMKNYVPPKGNKKGKKKDPNAPKRPPSAF
                     FLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIA
                     AYRAKGKSEVGKKGPGRPTGSKKKNEPEDEEEEEEEDGEDEEEEDEDEE"
ORIGIN      
        1 taagggcagt tctcgccgga gcttggggaa ggaagtctct ctgtggaggt ctgagggaag
       61 agctcgcgcc aggtagacgc tgcgccgtca tcatgggcaa gggggacccc aacaagccgc
      121 ggggcaagat gtccttgtac gccttcttcg tgcagacctg ccgggaggag cacaagaaga
      181 agcatcccga ctcgtcggtc aacttcgccg agttctcgaa gaaatgttcg gagagatgga
      241 agaccatgtc tgccaaggaa aagtcgaagt ttgaagattt ggccaagagc gacaaagctc
      301 gttatgacag ggagatgaag aactatgttc ctcccaaagg taataagaaa ggaaagaaaa
      361 aagatccaaa tgctcccaag agaccaccgt ctgccttctt cctgttttgc tctgaacatc
      421 gcccaaagat caaaagtgaa caccccggcc tgtctattgg agatactgca aagaaactgg
      481 gggagatgtg gtctgagcaa tctgccaaag ataaacaacc gtatgagcag aaagcagcta
      541 aactaaagga gaagtatgaa aaggatattg ctgcataccg tgccaagggc aaaagtgaag
      601 taggaaagaa gggtcctggt aggccaacag gctcaaagaa gaagaatgaa ccagaagatg
      661 aggaagagga ggaggaagaa gatggtgaag atgaagagga ggaagatgag gatgaagaat
      721 aactatctgt cctaaagtgt ggagtatatg tgctcaggca attattttgc taagaatgtg
      781 aaattcaagt gcagctcaac attagcttca gtataaaaac tacagatttt tgtatagctg
      841 atgagattct ttgtagagaa aatacttttt aaaaagagtt tgtagctttt tcaggggcta
      901 caacgtacag ttagatttaa agcttttgat gttgaatgtt tctaaatatt taatggtttc
      961 tttaatttct tatgatagca aaaaaaaaaa cttcatagga atttgtatta ccagtaaaag
     1021 aatttttttt agga
//
