LOCUS       XM_039100357            1383 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1700001F22
            (RGD1561558), mRNA.
ACCESSION   XM_039100357
VERSION     XM_039100357.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051356.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1383
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1383
                     /gene="RGD1561558"
                     /note="similar to RIKEN cDNA 1700001F22; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 7 Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:317314"
                     /db_xref="RGD:1561558"
     CDS             314..820
                     /gene="RGD1561558"
                     /codon_start=1
                     /product="high mobility group protein B4-like"
                     /protein_id="XP_038956285.1"
                     /db_xref="GeneID:317314"
                     /db_xref="RGD:1561558"
                     /translation="MGKDSKVRPKVNVSPYVHFMMDFRNQTREQQPNTYYDFTEFSRK
                     CSEKWKTISKKEKKKYEALAKRDKDRYQREMRNYTGPRRERRRRDPDAPRKPPSSFLL
                     FSQDHFDEIKEQHPNWTVAQVAKAAGRMWARCSEADKIPYEERAAVLRAKYLEEREAY
                     YHQCQRGK"
ORIGIN      
        1 ctgatgccct cttctggtgt gtctgaagat agctacagag tacttatata tcataaataa
       61 atcttttttt taaagaagag ggccttcctg taaatgactg agcttggctg ccattggtca
      121 gctcagggat gacatcacat tttcccttct ttgacgcaac aatgcccacc agcactgaaa
      181 aggccgggcc ctggctgagg cgcacacaga gggaagattt caccccatgg aggacactgt
      241 ctaggctgct cctgtagtga agaccaatcg ctgctctcca atcagcagga tcggaattcg
      301 tgcttctata aacatgggaa aagacagcaa agtaagacca aaagtgaacg tctcgcctta
      361 tgtccatttt atgatggact tcagaaatca aacaagggag caacagccaa acacctatta
      421 tgattttacc gaattttcta gaaagtgttc tgaaaagtgg aagaccatct caaagaagga
      481 aaaaaagaag tatgaagccc tggccaagcg cgacaaagat cggtaccaac gtgaaatgag
      541 aaactatacc ggaccgagaa gggagagaag aaggagagat ccagatgcac cgcggaagcc
      601 cccatcctcg ttcctgctct tctcccaaga ccattttgac gagataaaag aacaacaccc
      661 aaactggact gtggcgcagg tggccaaggc tgcagggagg atgtgggcca ggtgttcaga
      721 agcggataaa atcccctacg aggagagggc tgcggttctg agggccaagt accttgaaga
      781 gcgggaggcc tactaccacc aatgccagcg cgggaagtaa aagttcaagg gatggggcaa
      841 acccaatctg aaacaataaa cctcattcaa ctggctttct ggctctggtg tttagtgttt
      901 tcagactgcc ctgggatgct atgctgtggt agtgagtggt ttgattcagg tctagccttg
      961 gggaggatgg ctctcagaga ggcagctcta agacaggaaa tggctgcagg acccaaatgg
     1021 ctaggttgac atgggtgggc aagcacatgt gaaaagccat ttgtgtacgg ggagtcagct
     1081 ctatagctgc ctttgggacc aaaaagcata gtggtcggat cagagatttc ttaatacaaa
     1141 tcctagcttt ttctgcggct tgccatctca tgagaatggg gccaaaaaga cagcaaattg
     1201 tgctgtctgt gcaggcaacc attttgattt tgattgcaac tctgggtttg gaatcaagtt
     1261 atttgaactt cgacacatca aggtccatgt gacaggatag gttccatgtg gggcctccag
     1321 tctcttgagg gttaggtgca tcttctctga ctaaacccag acccgggctg tcgtctgctg
     1381 tat
//
