LOCUS       XM_039100203            3893 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus similar to ubiquitin specific protease
            12 (RGD1561481), mRNA.
ACCESSION   XM_039100203
VERSION     XM_039100203.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051356.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039100203.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3893
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3893
                     /gene="RGD1561481"
                     /note="similar to ubiquitin specific protease 12; Derived
                     by automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 8 ESTs, 11 Proteins, and 99% coverage of the annotated
                     genomic feature by RNAseq alignments"
                     /db_xref="GeneID:501659"
                     /db_xref="RGD:1561481"
     CDS             3..1094
                     /gene="RGD1561481"
                     /codon_start=1
                     /product="ubiquitin carboxyl-terminal hydrolase 12"
                     /protein_id="XP_038956131.1"
                     /db_xref="GeneID:501659"
                     /db_xref="RGD:1561481"
                     /translation="MTVSKFASICTMGANASALEKEIGPEQFPVNEHYFGLVNFGNTC
                     YCNSILQALYFCRPFRDKVLAYKSQPRKKESLLTCLADLFHSIATQKKKVGVIPPKKF
                     ITRLRKENELFDNYMQQDAHEFLNYLLNTIADILQEERKQEKQNGRLRNGDVDSEDNN
                     STPDPTWVHEIFQGTLTNETRCLTCETISSKDEDFLDLSVDVEQNTSITHCLRGFSNT
                     ETLCSEYKYYCEECRSKQEAHKRMKVKKLPMILALHLKRFKYMDQLHRYTKLSYRVVF
                     PLELRLFNTSGDATNPDRMYDLVAVVVHCGSGPNRGHYIAIVKSHDFWLLFDDDIVEK
                     IDAQAIEEFYGLTSDISKNSESRDFQSRD"
ORIGIN      
        1 taatgacagt ctccaaattc gcctccatct gtaccatggg cgccaatgcc tcggcattag
       61 agaaagagat tggtccagaa cagtttccgg tcaacgagca ctattttgga ttagtcaatt
      121 ttgggaatac ctgctactgc aactccattc tccaagcact ttatttttgt cgtccgtttc
      181 gggacaaagt tctggcatac aagagtcagc ccagaaaaaa ggaaagcctc ctcacctgcc
      241 tggcagacct cttccacagc atagccaccc agaagaagaa ggtcggcgtg atcccgccca
      301 agaagttcat caccagattg cggaaggaaa acgagctgtt tgataactac atgcaacaag
      361 atgcccatga attcttaaat tacctactca atacaattgc tgatattcta caagaagaaa
      421 gaaagcagga gaagcaaaat ggccgattac gtaacgggga tgtggacagc gaggataaca
      481 acagcacgcc agacccaacg tgggtccacg agatttttca gggaacatta actaatgaaa
      541 ccaggtgtct tacttgtgaa actataagca gcaaagatga agatttttta gacctttctg
      601 ttgacgtgga acaaaacaca tcaatcactc actgcctaag agggttcagt aacacggaga
      661 ctctgtgcag tgaatacaaa tactactgtg aagaatgccg gagcaagcag gaggcacaca
      721 aacggatgaa agtaaagaaa ctacccatga tcctggctct gcacctgaag aggtttaagt
      781 acatggacca gcttcatcga tatacaaagc tttcttaccg ggtggtgttt cctttagaac
      841 tccgtctgtt taacacttca ggagacgcaa ccaaccctga cagaatgtat gacctggtcg
      901 ctgttgtggt tcactgtgga agtggtccca atcgaggcca ttatattgca atagttaaga
      961 gtcatgattt ttggttgtta tttgatgacg acattgtaga aaaaatagac gcacaagcta
     1021 ttgaagaatt ctacggactg acatctgaca tctccaagaa ctctgagtct cgggactttc
     1081 agtctcggga ctgaaaggtg ccgcagtgga aagaagcttc tgcttgcttc tctggttgct
     1141 tccgaaagga tcgagctgat gtttaagaag agagaaagag agacagacag acgcaggacg
     1201 ctcagggcag tagctcactt tgcatacaat aaagcaaagg ctggattaac acgcccttcc
     1261 ggtcacgtta gttgaatttt ttgctcagga atcatgctgt ctgcagttcc acacaaggac
     1321 gtgatcagag ataccagctc ttgtgaagca gctgccagct gccgacacgg tttccgtagt
     1381 catcgcacca aggatgatgt gagttcttcg ggagggcagt ggaggagtta ggatgtgcta
     1441 gggtgattga gcacaccgca ctgtgcgcca gcgcgcggga tgcgtgcgtg cactgtgcat
     1501 ggagcagtga cggtctcttc aagcatcccg aaaagtacct ttgggcccaa cacttgcagt
     1561 tgccttcctg acgcacagag cacagacacg gagcccagtg tcaggaggtc aaagatacct
     1621 gcttctctgg agaagcgtgt gatcatatac agtgtatgta catggaggga acagctggtc
     1681 aaaactggct tcttgattcc ccaaggggag agactggctt tgtaatgatc ttttttcctt
     1741 atttatttta cttaaactgg ttgagtccaa gcattgtatg aagtgcccgt gattctacca
     1801 gctagtcttg gcgtatttga tttgtttgtc agctgaggca gtcctgttgt ccgtttctgt
     1861 tttcaaggtg aactgaacat tgtaactgaa tcactaaggt aatcatgaga ggatcgtagt
     1921 gagcggggtc agtgctgtcc cgagggactg tctctggctg agcacttgct ccttggttat
     1981 agtttgtcac ttttttttaa agctttaaat gcagtgaagt aggagttccc tgttgctaga
     2041 gtgataaagg aagccccagc atgaggctgg cctgctgcca gcccgaaccc caggacgtcg
     2101 gtgcgtgcag ctgtggcagt ctttagtcct gttttagcct tgggaaggac taatagagca
     2161 gccagaaccc catcagccag ggcagctcaa gccctttgga agattacatt ttggtagtgt
     2221 agtaatctca aaaagaagcc cctcgccctc ctgacctgag tgtcctatta gagcgctgtt
     2281 cagacactta cagctagatc tgttgggagt ttagggaaca gtacgggagt ctccacatat
     2341 ggccaggcat caagtgtatg acagtggctg aatgtaactt gcagtaagtg gttgaggatt
     2401 ctactcaaag tccagcttca gactctgtgt agccatcctc acacacactc ctcatagtgt
     2461 ggtggcggcc tgttgataaa gcccctggtt ttctaaagct attttactaa aactgttgac
     2521 tgagaagaaa acagcaaaaa gaaatgtttt ttgtgctgct atgattaaca tttattttct
     2581 acctttagct caggaaatga cttcatctat tcatcccata agcagatttg caacggggtc
     2641 acttagctaa tcgggcttcg tagacagatg tgctgggaga aaaagatgac cttttggcaa
     2701 actcattttg atagtttctg aagccttacc ctggctgggt ttcgtgatct gccagcattg
     2761 cacagagaac ggcaaccaag agcacggggg ttagagctgc gcgcgagaga gcacacgccc
     2821 gtcgggccca caccagactg tgttggaatt cagaactgca ttctctgcag ctttgtgttc
     2881 aaagaaaagg cataaagtag ggctgaggcc ttgaggctgc cgtgcgcagc cctgaagtac
     2941 tgtgtctgct tgcacacgtt attttgaagc aggaaaagcc tagttaagtt ctccacaagg
     3001 caagttatag cagggggcca agctccaggc aggcagcctt gcttggctca ggtctgtgct
     3061 gtacggtttg caggggacgg aatcctgggt gttggctcta aatttacttt ttatccttag
     3121 tgcagatgga tctgagtaag acattttgaa ttttatcaga aactcagtaa acttaaaaaa
     3181 acatacaggg tttgggttgg ggactgggat aacaggtata agaagtgaga aagaaaggtg
     3241 acccacccag cacacatttc aggtgattgt ttgcctgtga ttattatgag ggcagatgcg
     3301 agtttggaca aggctggttg ctctgtaatt atgtacatgt ttgcttgggc agccgtccca
     3361 aattttgtat attagaacaa gagtttctat gaattatcat aactaaagta aatattctaa
     3421 gtggagccca cttgcgatca tcagcctctg tcacgaggat tttaccttta gaaggttact
     3481 caagacagga gccggtggct taggaagggg caaggaaatg tgctgtagcg gcctgtggct
     3541 tcagccatca gcatccctcg gggttttctt tccatgatga ccatagaaga cctcactttg
     3601 ataacatgct cctcctgatg ctttctgtaa agatgttctt cataagcagt ctctcgtgag
     3661 ggatgtggct gggagctggg aggcaaggga ctgcagtgaa cttagctgtg tgaccttggg
     3721 caagtcacct aacctctctg tgcttcagtc tccctcttgt aaatgggagt aatacctacc
     3781 tcacagggtt gttgtgggga ttaattagag aggaagtctg taaagcattt aaaaggttct
     3841 tgaagaaggc gctatataaa tacaaaataa tatctattaa agttgaaaaa aaa
//
