LOCUS       NM_001402528            3430 bp    mRNA    linear   ROD 08-APR-2024
DEFINITION  Rattus norvegicus zinc finger protein 534 like 2 (Zfp534l2), mRNA.
ACCESSION   NM_001402528 XM_039111350
VERSION     NM_001402528.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3430)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000005.1.
            
            On Mar 17, 2022 this sequence version replaced XM_039111350.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643298.30095.1,
                                           SRR26643284.8316.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN12840108, SAMN16676806
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-159               JAXUCZ010000005.1  163404404-163404562 c
            160-259             JAXUCZ010000005.1  163397052-163397151 c
            260-386             JAXUCZ010000005.1  163370480-163370606 c
            387-3430            JAXUCZ010000005.1  163366520-163369563 c
FEATURES             Location/Qualifiers
     source          1..3430
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /map="5q36"
     gene            1..3430
                     /gene="Zfp534l2"
                     /gene_synonym="RGD1561413"
                     /note="zinc finger protein 534 like 2"
                     /db_xref="GeneID:500585"
                     /db_xref="RGD:1561413"
     exon            1..159
                     /gene="Zfp534l2"
                     /gene_synonym="RGD1561413"
                     /inference="alignment:Splign:2.1.0"
     exon            160..259
                     /gene="Zfp534l2"
                     /gene_synonym="RGD1561413"
                     /inference="alignment:Splign:2.1.0"
     CDS             230..2011
                     /gene="Zfp534l2"
                     /gene_synonym="RGD1561413"
                     /note="zinc finger protein 2 homolog; zinc finger protein
                     260-like"
                     /codon_start=1
                     /product="similar to BC021442 protein"
                     /protein_id="NP_001389457.1"
                     /db_xref="GeneID:500585"
                     /db_xref="RGD:1561413"
                     /translation="MSMALGNTLQGFLTFKDVVPEFTLEEWESLTYAQRALYMDVILE
                     TYNNLLSVENHLIHGKHGEVLEQDTECIVHELVNIQEKFCKWDEISKMTLESTQSTPY
                     KTHLRDPSLRSSNLKRHKAGKTREVYKYKDCVQFSNECAIIGVNSGIHIENKEHKNTE
                     FDNDFVYKHKLMLKEDINGKNLHQDGECEKCFTKTRKLHFYQRIHTGEKPYKCSECDK
                     CFVSNLSLIIHQRIHTGEKPYKCSQCDKYFARESCLRRHQRSHSGEKPYKCSQCDKYF
                     AQKYYLSIHQRIHTGEKRYKCSQCDKYFSQESCLRRHQRIHTGEKPYKCSQCDKYFSQ
                     KFHLSIHQRIHTGEKPYKCSECDKCFTEKRTLRNHMRIHTGEKPYKCSECDKCFGRKG
                     SLRIHQRIHTGEKPYKCGECDKCFGQQSHRSIHQRIHTGEKPYKCSQCDKHFTQESCL
                     RRHQRIHTGDKPYKCCQCDKYFSQEFYLSIHQRIHTGEKPYKCSECDKCFTEKGTLRN
                     HMRLHTGEKPYKCSECDKSFVQQSHLTVHQRSHTGEKPYKCSQCDKCFARESCRRRHQ
                     RIHTGDKPYKCNQCAKYFAGESYLSIH"
     exon            260..386
                     /gene="Zfp534l2"
                     /gene_synonym="RGD1561413"
                     /inference="alignment:Splign:2.1.0"
     exon            387..3430
                     /gene="Zfp534l2"
                     /gene_synonym="RGD1561413"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gcccttcaaa ctttctccgt gtctttgctg cctccctttc aggaagtcct ggtgggagac
       61 tcgtcccgga gacctagagg tacctgaaaa cttcctggag ctgcagttgc ggtggcggct
      121 tcctagaaca ttcatcagct cgtcctgtca ccctgccagt tttcaaaccc gtttgtgaaa
      181 tttcaagaac acttccaata tttgaatctg ggagaagaac aacacaagaa tgagtatggc
      241 tctgggaaac actctacagg gtttcttaac cttcaaggat gtggttccag agttcacact
      301 agaggaatgg gaaagtctca cttatgctca gcgggcactg tacatggatg tgattttgga
      361 gacgtacaac aatctattgt ctgtggaaaa tcatctgata catggaaaac atggggaggt
      421 cttggaacaa gacacagagt gcattgtcca tgagcttgtg aatattcaag agaagttttg
      481 taaatgggac gaaattagca aaatgaccct tgaatccacc caaagtacac cttataaaac
      541 tcatctccga gatccctccc ttcggtcctc aaacctgaaa agacataaag ctgggaaaac
      601 aagagaagtt tacaaatata aagactgtgt acagttttca aatgaatgtg ctatcattgg
      661 tgtaaattct ggaatccata tagagaacaa agaacacaaa aatacagaat ttgataacga
      721 ttttgtctat aaacataaac tgatgctgaa agaagacatt aatggtaaga accttcacca
      781 agatggtgaa tgtgagaaat gctttaccaa aacaaggaag cttcattttt atcagagaat
      841 tcatacagga gagaaacctt acaaatgcag tgaatgtgac aaatgctttg tctccaacct
      901 tagtctgata attcatcaga gaattcatac aggagagaaa ccttacaaat gtagtcagtg
      961 tgacaaatac tttgcccgag aatcttgtct tagacgtcat cagagaagtc attcaggaga
     1021 gaaaccttac aaatgtagtc aatgtgacaa atactttgcc caaaaatact atcttagtat
     1081 tcatcagaga attcatactg gagagaaacg ttacaaatgt agtcaatgtg acaaatactt
     1141 ttcccaagaa tcctgtctta ggcgtcatca gagaattcat acaggagaaa aaccttataa
     1201 atgtagtcag tgtgacaaat acttttccca aaaattccat cttagtattc atcagagaat
     1261 tcatacagga gagaaacctt acaaatgtag cgagtgtgac aaatgcttca ctgaaaaacg
     1321 cactctgaga aaccatatga gaattcatac aggagagaaa ccttacaaat gtagtgagtg
     1381 tgacaaatgc tttggccgca aaggtagtct gagaattcat cagaggattc atacaggaga
     1441 gaaaccttac aaatgcggtg aatgtgacaa atgctttggc caacaatctc atcgtagtat
     1501 tcatcagaga attcatactg gagagaaacc ttacaaatgt agtcaatgtg acaaacattt
     1561 tacccaagaa tcttgtctta ggcgtcatca gagaattcat acgggagata aaccttacaa
     1621 atgttgtcaa tgtgacaaat acttttccca agaattctat cttagtattc atcagagaat
     1681 tcatacagga gagaaacctt acaaatgcag tgaatgtgac aaatgcttta ctgaaaaagg
     1741 cactctgaga aaccatatga gacttcatac aggagagaaa ccttacaaat gcagtgaatg
     1801 tgacaaatcc tttgtccaac aatcccatct tactgttcat cagagaagtc atacaggaga
     1861 gaaaccttac aaatgtagtc aatgtgacaa atgttttgcc cgagaatcct gtcgtaggcg
     1921 tcatcagaga attcatacag gagataaacc ttacaaatgt aatcaatgtg ccaaatactt
     1981 tgccggagaa tcctatctca gtattcatta gagaattcat tagagaattt gtaaggagag
     2041 aaaccttaca aatgtggtga atgtgagaaa tactttacgt acaaatttaa tattagtatt
     2101 tatcagagaa tttatactgg agagaagcct tacaaatgca gagaatctgc aaatgcttta
     2161 ctgaaacagg tactctgaaa aaccgtatga gaattcatac aggaaataaa ccttaaaaat
     2221 gcagtgaatg tgacaaatga tttgactaag aagttagtcc aagaatttat cagagaattc
     2281 atatagtaga gaaaccttac aaatgctttg gtgaacaatc ccatcttagt attcatcaga
     2341 gagttcatac aggagataaa cctttcacat gcagtaatta tgaaaaatgc tttggtccca
     2401 gagtctgaga attcatctga gaattcatac aggggaaaaa ccatacaaat gtggttaata
     2461 tgacaaatgc attactcaaa aatccagtct tcatgtacat tagagacttc atagaggaga
     2521 gaaaccttac aaaagcagtg aatgtgacaa atgctttacc caaatattcg cctgtgaagg
     2581 catcagagat ttcatacatg agataatact tgcaagtgtg atgtacatga aaaatgcatt
     2641 aactacaatg tctgacagat tacatagaga aaaattataa atttagccaa tgggacaatt
     2701 ctttaccaac aaatatcatc ttaaaattga ttagataata cttaatggag aaaaactttc
     2761 aaatgtatta gaggtatgaa ccttttggcc tatctcttag aattaagaaa atacatgtta
     2821 caatctgaag atataacaat gtatttggaa atatctttga cttcatttca ggttagagaa
     2881 aacattttaa atttttttgt ggggaaagta tatcttgcaa caattgaggt tccacacaag
     2941 cgaatttgta taattatgaa aacttcagaa accttcattc gatgttcaaa tcttagtgaa
     3001 tgtcaactac ttatgctgag aaaaatctct gaaaatatga cagtgtagga aagttttcat
     3061 tgaacttgta cgtgtccacc ctcaaatatt ccaagatgaa gacatgtggg gaagccagaa
     3121 taatatagtg ttgtgtaaca ctttcatggc aacagaaatt atctatttca aatggacttc
     3181 acccctcaaa atatctaata aaactggcag catcctgtat attcaaggaa tcaaattcag
     3241 acaaattata ctttgtttta tttgacaaac tgagatacca aaactgcttg ttcttgatcc
     3301 tataaatatg tctacagatg tgaaatctcc tttgacagtc cagtattcat aattcttatt
     3361 aaatgctggt tttatgtttg aggataacaa ctgattatgt gtccttgggc tgtgtggtca
     3421 acaactcctt
//
