LOCUS       XM_039106587             555 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus similar to ribosomal protein L31
            (RGD1561317), mRNA.
ACCESSION   XM_039106587
VERSION     XM_039106587.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051338.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039106587.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 4% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..555
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..555
                     /gene="RGD1561317"
                     /note="similar to ribosomal protein L31; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 5 Proteins, and 95% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:366191"
                     /db_xref="RGD:1561317"
     CDS             1..522
                     /gene="RGD1561317"
                     /codon_start=1
                     /product="60S ribosomal protein L31-like"
                     /protein_id="XP_038962515.1"
                     /db_xref="GeneID:366191"
                     /db_xref="RGD:1561317"
                     /translation="MDWHGAAHSIVVTSLLIKTFHPPPRDPEVVRLHDFPSHNPSRPS
                     FPTWSAPAKKGGEKKKDCSAVNEVVTRECTINIHKCIHGVGFKKRAPRALKEIWKFAM
                     KEMGTPDVCIDIRLNKAIWAKRIRNVPYCIRVRLSRKRNEDEDSPNKLYTLVTYMPVT
                     TFKNLQTVNVDEN"
ORIGIN      
        1 atggactggc atggtgctgc acacagtata gtagtcacta gcctgctaat aaagactttc
       61 cacccgcctc cccgtgaccc ggaagttgta cggctacacg actttccatc ccacaatccc
      121 tcacgccctt cttttccaac ttggagtgct ccggcaaaga agggtggcga aaagaagaaa
      181 gactgttctg ccgtcaacga agtggtgacc cgagaatgca ccatcaacat tcacaagtgc
      241 atccatggag tgggcttcaa gaagcgtgct cctcgggcac tcaaagaaat ttggaaattt
      301 gccatgaagg agatggggac tccagatgtg tgcatcgaca ttaggctcaa taaagccatc
      361 tgggccaaga gaataaggaa tgttccgtac tgcattcgag tacgtttgtc cagaaagcgt
      421 aatgaggatg aggattcacc aaacaagctc tacacactgg taacttacat gcctgttacc
      481 acattcaaaa atctacagac ggtcaatgtg gatgagaact aactgctgaa tgtcaaataa
      541 agttacagaa ctgcc
//
