LOCUS       XM_006246531            5734 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus RGD1561277 (RGD1561277), mRNA.
ACCESSION   XM_006246531
VERSION     XM_006246531.3
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051345.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_006246531.4.
            
            On Jan 21, 2021 this sequence version replaced XM_006246531.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 6% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..5734
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..5734
                     /gene="RGD1561277"
                     /note="RGD1561277; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 13 ESTs, 3 Proteins, and
                     96% coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:691468"
                     /db_xref="RGD:1561277"
     CDS             1..2733
                     /gene="RGD1561277"
                     /codon_start=1
                     /product="zinc finger protein 300"
                     /protein_id="XP_006246593.2"
                     /db_xref="GeneID:691468"
                     /db_xref="RGD:1561277"
                     /translation="MSQNEIKSKLQNKVVIRTRQSALFYQRLVAFTVNQKILTNHGGE
                     SGSAQSGSRSAVGCSFPICLGLLNPGCFRFPPGSDPGYLVFCSFSVKGNGRLTSGTEL
                     WFDGPLMSKGVKTMDMSEGLVSFEDVSVDFTWDEWQDLDEAQRKLYRDVMLETYSSLM
                     SLNQCDPKPELILKLEKEAGPWKEDNSPNQSVPDVKNVNGRNEVSHDSQKIRRCNLVI
                     AKSSASAKRAPAGKALNSSYCISDLAIKNGTSSGMSPGVLNVWESMLLPSKPSKMQAR
                     EGLDLPDVTRGFPRLPEALSLHPNTEFEQQHFQYCRPSEASHVKPVWLQKTFPMRNPS
                     SKLRDNSQQLEKLALPAKEGTRAQLPAFECQVCGKLFCKNSHLTQHFKMHKEKCYRGN
                     NCGPILNIQSKLPTYQSLGVGEELYTRDEAGKYICQKSAKSIQQKIIGDGRIVCGKTV
                     CSKLNFSVQQNPRKDEKSHDFSGKPISKSNLHELTTPHRYERVHECSACGKAFNPTPH
                     VYSHSGAHPAEKPYECEDCQQSKLVGHPPAHAQEKRYVCHVCGKAFYKRAHLHAHQRT
                     HTGEKPYDCKECGKSFRLKSFLVVHQRIHTGEKPFACDTCGKSFKQRTSLYTHIRIHT
                     GEKPYECKECRKSFILKSYLTVHQRTHSGEKPYGCDICGKSFKQNSHLHAHKRTHTSE
                     KPYECIVCGKSYKQSPSLYTHKKVHTSEKPYECKQCRKSFSLKFHLTRHQRTHSGGRT
                     YQCKVCGKAFKHTQNLYLHHRTHTGEKPYECKECKKLFSVKSNLSVHQKTHTGEKPYE
                     CNICRNAFKRRCDLTIHQRVHTGEKPYECKECRKTFSIKSGLIVHQRIHTGEKPYECN
                     VCGKRFNQKSNLSTHEKIHTGEKPFECKDCSKAFSVKSYLTIHQKTHLGEKPHS"
ORIGIN      
        1 atgtcacaga atgaaataaa gtcgaagtta cagaataaag tggtaattag aacccgccag
       61 tcagctttgt tctaccaacg attggtcgcc tttactgtca atcaaaagat tctaaccaat
      121 catggaggag aatctgggtc tgcccaatca ggctcacgct ctgcggtggg ctgttctttc
      181 ccgatttgtc tcgggctcct caatccaggt tgtttccggt ttccaccggg gtcagaccct
      241 ggctatttgg tcttttgctc tttttcggtg aaaggcaacg ggaggctgac gtccggcacc
      301 gagttatggt ttgatggtcc tctcatgtct aaaggcgtta agacaatgga tatgtctgag
      361 ggcttggtgt catttgagga tgtgtctgtg gacttcacct gggacgagtg gcaggacctg
      421 gatgaagctc agaggaagct ctacagggac gtgatgctgg agacctacag cagcctgatg
      481 tccttgaatc agtgtgatcc caaacctgag ttgatcctga agttggaaaa agaagctggg
      541 ccgtggaagg aagacaattc tccaaaccag agcgtcccag atgtgaagaa tgtgaatggc
      601 cggaatgagg tcagccatga cagccaaaag atacgcagat gcaacctggt aattgccaag
      661 agcagcgcat cagctaagag ggctccagca ggaaaagcct tgaatagctc gtactgcatt
      721 tcagatctgg ccataaagaa cggcacatct tctggaatga gccctggggt ccttaatgta
      781 tgggaaagta tgcttctccc tagcaagccc agtaagatgc aggctagaga gggacttgat
      841 cttcctgatg taaccagggg gttccccaga cttcctgagg ctcttagtct acatcccaat
      901 actgaatttg aacaacagca ttttcagtac tgtaggccca gtgaagcttc ccatgtgaag
      961 ccagtgtggt tacagaaaac attccctatg agaaatccct ccagtaagtt gagggacaac
     1021 agccaacagt tagagaagtt agctcttcct gccaaagagg gaactcgggc acagctgcca
     1081 gcttttgaat gccaagtgtg tgggaagtta ttctgtaaaa attcccatct cacacagcat
     1141 tttaaaatgc acaaagaaaa atgttataga ggtaataact gtgggccaat actcaatata
     1201 caatcaaagc tcccaacata tcagagcttg ggtgtgggag aagagctcta cacacgtgat
     1261 gaggctggga agtacatctg tcagaaatca gcaaaaagca ttcagcagaa aatcataggc
     1321 gatggaagga ttgtgtgtgg gaagaccgtg tgctcaaaat taaatttcag cgttcagcag
     1381 aaccctcgca aggatgagaa atcccatgat ttctctggaa aaccaatcag taagtcaaac
     1441 ctccatgagc tgacgacacc tcacagatac gagagagtgc atgagtgtag tgcgtgtggc
     1501 aaagccttta atcccacacc acatgtctac tcacactcgg gagctcaccc ggctgagaaa
     1561 ccctatgagt gtgaagactg ccagcaatcg aagctcgtgg ggcacccgcc agctcacgcg
     1621 caggagaaac gctatgtgtg tcatgtgtgt ggaaaagcct tttacaagcg agcccactta
     1681 cacgcacacc agaggaccca cacaggtgag aagccatatg actgtaaaga atgtgggaaa
     1741 tccttcagac tgaagtcgtt tcttgtcgta catcagagga ttcacacagg tgagaaaccc
     1801 tttgcgtgtg atacgtgtgg gaaaagcttc aagcagagga cgagtctcta cacacacata
     1861 agaatccaca cgggtgagaa gccctatgag tgtaaagagt gtaggaagtc attcattctc
     1921 aagtcatacc tcactgtgca ccagagaact cactcgggcg agaagcccta tgggtgtgac
     1981 atatgtggaa aatcctttaa gcaaaattcc caccttcatg cacataagag aactcacaca
     2041 agcgagaaac cctacgagtg tattgtatgt ggcaaaagtt acaagcagag tccgagcctc
     2101 tacacacata agaaagtcca taccagtgag aaaccctatg agtgtaaaca atgtagaaag
     2161 tcatttagtc tgaaattcca cctcactaga caccagagaa ctcactctgg tgggagaacc
     2221 taccagtgta aagtatgtgg gaaagccttt aaacacacac aaaatctcta cttacaccac
     2281 agaactcaca ctggggagaa gccctatgag tgtaaagaat gtaagaaact attcagcgta
     2341 aagtcaaatc tcagtgtaca tcagaaaacc cacaccggtg aaaagcccta cgagtgtaac
     2401 atatgcagaa acgcctttaa aagaaggtgt gacctaacta tacaccagag agtccacaca
     2461 ggcgagaagc cctacgaatg taaagagtgc aggaaaacgt tcagtataaa gtcagggctc
     2521 attgtacatc agaggattca cacaggcgag aaaccatatg agtgcaatgt ctgtgggaaa
     2581 cgtttcaacc agaagtcaaa tctctccacg catgagaaaa ttcacacggg tgagaaaccc
     2641 tttgagtgca aagactgcag caaagcattt agcgtcaagt cctatctcac tatacatcaa
     2701 aaaactcact tgggtgagaa accccactca tgagctctgg ggaagccttc tgtgagaaga
     2761 caaccctcca cagacatcct agcgcaagcc caggtcagaa tccctgtgaa cagagaatgt
     2821 agaaaaagtg tgagctgttc atcctctcca ggtaccgcag agaggtgaga ggtgtgggtc
     2881 gtcgtgcatg taaagattgc agagactccg tcagtcctaa gtcagatctc ctcattaatt
     2941 agtgaactca aaacacgaga aacctacccg tgtgggacat gttcagaagg cttctgccag
     3001 atgtcaggcg ttagctattg gagaagctct gcaggcgaga gaccccctct gactgagccc
     3061 tggaacagtc ggtcttcagt aagactggag aatccgtact gacagaaacc ctgagtgtag
     3121 ctctgtggaa gcccttcagt cagaagtctg aagagtcccc ataggggaga agccctgtga
     3181 atgtaacaaa tgcagcaagg catttgtctc ctttccctgt gtgtcacaga gtcttgtcag
     3241 tgtagtctac agagcattca cctgccacat gtcaagccta gtacacacca gagaaggctc
     3301 gctgctgaga ggccttagga aagtaaggac gaggaaacat ttccagcaaa tgtgtggcgg
     3361 ggtcctcaag tagaaaagct ctgtgggtgg gagtggggga gtcccaacag caggtaactc
     3421 actgtgtggc actcgcacag ctgagaagtg tgaggtgagt gcagtgtgtg tgtggagaaa
     3481 ccttttccta gatgtcagat ctcagcagtc attaggtgag gaacgcttca gctgaaaggc
     3541 accctttact gcataccaaa gaaggcaggt aggataagcc atagcacttt aatgtgtgta
     3601 caaaaacttg attctgtaag gcgaagacat ctgtctccac tagagaacca cgcaaacaca
     3661 gaaccccatg aatataaaaa ctgaaccaaa aaacaaaaag acaatcaaaa caaaactcac
     3721 aaaagccctg agattttaaa gaatgtagaa aatatttcat gtgcaagaac tcaaataggt
     3781 aatcatacac tcacataagt atgtataaca aacagacata atgtgcatca gaaatcccta
     3841 cccctgagaa accagagtga tatatacaca cacacacgca cacgcacaca catacacacg
     3901 catgacttac ccagtgcaaa cactggaggg ctcgcaggct ggaagtacct aaatgtcatg
     3961 tacatggaca acccttttac aggaaggtga cctccacatt gaagaatcca taagagaggg
     4021 gatgctgtta acatgtggga aagcctatct agagtgttac agatatggaa aaatgtcact
     4081 gtgagaggtc ctatatgcac aagtctcctg tgctaagatt cacttttctt cctttaccgg
     4141 ggcctggcag cctatatgtg tgtgtagtgc tttggggaga acatgcccta agttttatcg
     4201 gagttttaac atttgtaatg agtcctttct ttctggcctc aaccacgaat gcgtgcaata
     4261 cattatctct gaatttgtcc tcacggcctg aaaggcaggg aggtttacct ttgataagaa
     4321 atgtagcaaa cggcactgat ttaaggacat gccttattgg agagagtgaa ggcttcgtat
     4381 gtttataaat ctcctgtttg tatggtgata taacattcta cacaagcttt ttgcaacgta
     4441 aagcaaattc attgtaactc attttaaaag catctcagac agaacctttc atgtgttttc
     4501 aagccatttg gtggataaaa agaaccatga catttcaata aactctaaat gccttacctg
     4561 gcaccagcat cacattaaaa agatcgtaaa gcttttttca tgtgtggaat atatgtgtat
     4621 ccataaaaca ttgacatccg tatatgggaa attattcatt aaaatgacat tgtcactctc
     4681 taaaaagtgt taagagttct aagattattt ctgagcgggg tgtagcgggg tgtatcttta
     4741 attccaacac ccagaaggca gaggcactca gatatctgag tttgagtcca gcctggtctt
     4801 cagagagaga gttctaggcc agcagagcta cacgatgaga ccccaactta aaaatataaa
     4861 aagtaacaat tgttgaatgc gccatagaat gaggaacatt gatgtttgtc acaaccaaag
     4921 tttaagaact gcagctaaca ctagtggcta ccaggactgc agctgaggtc cctggaggac
     4981 acgattgtcc ttgtcctgag gcatgaacag gtgtctactt agtccgatgg ggcactaaca
     5041 acagaccaaa gaaacaattc tctcacgctc ccgtctggtg agtccagtga gtttactgag
     5101 cttgcaggag tgtgatggca gcagctgcat cactgaaaag cccacctcgg tgtggaggtg
     5161 acctgggaaa agtgggacgc ttacaggaag ctcagcaggc atatagcttg tcagagagcc
     5221 tccccttccc agcagccttt cctgtttcat aggcttagga agggatgggc gctgtgcatc
     5281 ttatatgggg ggctttggga gacttagggg tttatttttg agtcttcatg ggcattcccc
     5341 caggacggaa tgttttcatt cagggggtac agctacacac caggcacaac agactgctac
     5401 aggtaaggtt tgcacatacg attttatcac actagcagac gttctctgga tgcaggggca
     5461 tgccggaaat gcactttttg taatgttctt taatgatttt cattaaggtt ttcctcatta
     5521 aattttatcc tagcctgttt acatcttgta aggctcctat ttgtattttc ttaatctttt
     5581 aaaatttaac tgtatatgac gtttgcaacc aactatctgc caattataga tgttagtgct
     5641 tttctaacat ggtgatttct taatgtgaac caatatttct aaaagagtaa atattaaggt
     5701 aggaaaacat gaataaagat atttttcaca gcca
//
