LOCUS       NM_001415956            5338 bp    mRNA    linear   ROD 01-APR-2024
DEFINITION  Rattus norvegicus NHS like 3 (Nhsl3), transcript variant 1, mRNA.
ACCESSION   NM_001415956 XM_039110610
VERSION     NM_001415956.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 5338)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000005.1.
            
            On Jan 6, 2023 this sequence version replaced XM_039110610.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643297.20221.1,
                                           SRR26643288.23814.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760494,
                                           SAMN09345330 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-362               JAXUCZ010000005.1  146877143-146877504 c
            363-533             JAXUCZ010000005.1  146855133-146855303 c
            534-589             JAXUCZ010000005.1  146854996-146855051 c
            590-710             JAXUCZ010000005.1  146854641-146854761 c
            711-824             JAXUCZ010000005.1  146853718-146853831 c
            825-3335            JAXUCZ010000005.1  146851121-146853631 c
            3336-5338           JAXUCZ010000005.1  146848747-146850749 c
FEATURES             Location/Qualifiers
     source          1..5338
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /map="5q36"
     gene            1..5338
                     /gene="Nhsl3"
                     /gene_synonym="Hapstr1; RGD1561149"
                     /note="NHS like 3"
                     /db_xref="GeneID:500552"
                     /db_xref="RGD:1561149"
     exon            1..362
                     /gene="Nhsl3"
                     /gene_synonym="Hapstr1; RGD1561149"
                     /inference="alignment:Splign:2.1.0"
     CDS             137..3358
                     /gene="Nhsl3"
                     /gene_synonym="Hapstr1; RGD1561149"
                     /note="isoform 1 is encoded by transcript variant 1; HUWE1
                     associated protein modifying stress responses; Nance-Horan
                     syndrome protein like 3"
                     /codon_start=1
                     /product="NHS like 3 isoform 1"
                     /protein_id="NP_001402885.1"
                     /db_xref="GeneID:500552"
                     /db_xref="RGD:1561149"
                     /translation="MAARAPPAAPAADEPGSPGGPPRRKKSRSGLRRAFSWLRGKRRK
                     KKAAGAEGAESAAPRAKKAEDKAKRSKGKSRGSAKAESDNRQGAGPSQGPGSVGDEHQ
                     DNVFFPSGRPPHLEELHTQAQEGLRSLQQQERQKLSKGGWDHGDTQSIQSSRMGPDED
                     TISFCSQKSYMTESSTAEDALSIRSEMIQRRGSTFRPHDSFPKSGRSGRRRRERRSTV
                     LGLPQHVQKELGLRNNREAPGTPQPPGSRDAVRIPTVDGRPAGLALGTGVRVSLQALE
                     AEAEAGTDTEAIIQRHIDRVYRDDTLVGRSTGARPPPLTRPVSLAVPGLTGGAGSPEP
                     LSPAMSISPQATYLSKLIPHAVLPPTVDVVALGRSSLRTLSRCSLLSASPASVRSLGR
                     FSSASSPRPRSRNASSSSDNWSHSQSSETIVSDGSTLSSKGGSEGQPEGSVASNSVVP
                     PPPGGSGRGSPSGGSTAEVSDTASIRSSGQLSGRSVSLRKMKRPPPPPRRTYSLHQRG
                     SAVPDGPLGLPPKPERKQQPQLPRPPTTGGSSGVGAVSCPPSSGGTWGSGLSPGGSRR
                     PPRSPERTLSPSSGYSSQSGTPTLPPKGLAVAPASPGKAQPPKPDRVTSLRSPGASVS
                     SSLTSLCSSSSDPTPLDRSGPQASNPLSDRFVIPPHPKVPAPFSPPPSKSKSSNQAAP
                     ALAAPAVVPGPVSTADISPASPSMPQTTLTPAQESPIASKDQSPPPSPPPSYHPPPPP
                     TKKPEVLEEVPPPPETVEILPDPSWPPPPPPAPEEQDLSMADFPPPEEVFFSAGPELG
                     PLEPCSSEAAIPSAASLSQTPPPAPPVPPPASSVSEPLAKLPQKDSASCKNSGTPRED
                     AGTPLVTPSLLQMVRLRSVGASTGAPNPPPGSSAPQKPLRRALSGRASPVPAASSGLH
                     AAVRLKASSLAASESPGNALPTGAPETEPRSPQSPASKASFIFSKGTKKLQLERPVSP
                     EAQADLQRNLVAELRSISEQRPSQTQKKPSKAPPPVARKPSVGVPLSPSLPRAESLDA
                     PSTNGLPHAEDRTKGELTENGGVQLAATEKMGPHGSDPQKKLV"
     exon            363..533
                     /gene="Nhsl3"
                     /gene_synonym="Hapstr1; RGD1561149"
                     /inference="alignment:Splign:2.1.0"
     exon            534..589
                     /gene="Nhsl3"
                     /gene_synonym="Hapstr1; RGD1561149"
                     /inference="alignment:Splign:2.1.0"
     exon            590..710
                     /gene="Nhsl3"
                     /gene_synonym="Hapstr1; RGD1561149"
                     /inference="alignment:Splign:2.1.0"
     exon            711..824
                     /gene="Nhsl3"
                     /gene_synonym="Hapstr1; RGD1561149"
                     /inference="alignment:Splign:2.1.0"
     exon            825..3335
                     /gene="Nhsl3"
                     /gene_synonym="Hapstr1; RGD1561149"
                     /inference="alignment:Splign:2.1.0"
     exon            3336..5338
                     /gene="Nhsl3"
                     /gene_synonym="Hapstr1; RGD1561149"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 agctctccct cggcctccgc cgcccaaact tttttctccg ggcgcgtctc cagcggcggc
       61 cgcccccgcg catgggcgcc gcgctgcagg gggcctgacc cccgccgctg gcaccgcgcg
      121 tccccagccc cgcgccatgg cggcccgcgc gccccccgcc gcacctgcgg ccgacgagcc
      181 tgggagcccc ggcggccccc cgcgcaggaa gaagtcccgc tccggcctcc gccgcgcctt
      241 cagctggctg cggggcaaac ggcgcaagaa gaaggcggct ggggccgagg gcgccgagtc
      301 cgccgccccg cgggccaaga aagcggagga caaggccaag cggtccaagg gcaaaagccg
      361 aggttctgcc aaggccgaga gtgacaaccg tcagggcgca gggcccagcc aggggccagg
      421 atctgtagga gatgaacacc aggacaacgt gttcttcccc agtgggagac ctcctcatct
      481 ggaagagctg cacacgcagg cccaggaggg gctccgctcc ctacagcagc aagaaagaca
      541 gaaactgagc aagggtggct gggaccatgg agacacccag agcatccagt cttcccggat
      601 ggggccggat gaagacacca tctccttctg cagtcagaag tcatacatga cggagagctc
      661 cacggcggaa gatgcgctct ccattcgctc ggagatgatc cagcgcagag gctccacctt
      721 cagaccccat gactcatttc ccaaatctgg aaggtcaggc cggcggcgga gggagcggag
      781 gagcacggtg ctgggactgc ctcagcatgt gcagaaggag ctgggccttc ggaacaaccg
      841 cgaggctccg ggcactccac agcctcccgg gtcacgggac gctgtccgaa ttcccacagt
      901 ggatggtcgc ccagcgggcc tggccttagg gacaggggtc cgggtgtccc tgcaggctct
      961 ggaggcagaa gcagaggctg gcaccgatac agaggctatc atccagcgcc acatcgaccg
     1021 tgtttaccgt gatgacacgc ttgttggccg atccacggga gcgcggccac cacccttgac
     1081 aaggcctgtg tctctcgcag tgcctgggct gacaggagga gcaggatctc cagagccact
     1141 gagcccagcc atgtccatct caccccaggc cacctacttg tcgaagctga tcccgcatgc
     1201 tgtgctgccg cccacagtgg acgtggtggc cctgggccgc agcagcctgc gcactctgag
     1261 ccgatgcagc ctgctctctg ctagcccagc ctcagttcgc tcactgggcc gcttctcctc
     1321 agcttccagt ccaaggcccc gcagccgcaa tgcttcctcg tccagtgaca actggagcca
     1381 ctctcagtcc tccgagacca ttgtgtctga tgggtccact ctgtcctcta aggggggctc
     1441 tgagggccag ccagagggct ctgtagctag caatagtgtg gtaccccctc ctccaggggg
     1501 tagtgggaga ggctccccca gcgggggtag cactgctgag gtctcagaca cagccagcat
     1561 ccgaagcagt gggcagttgt ccggcaggag tgtgtccctg cgtaagatga aacggcctcc
     1621 cccgcctccg cgccggacct actccctcca tcagcggggc tcagcggtcc ctgatgggcc
     1681 cttagggttg ccccctaaac ctgagcggaa gcagcagcca cagctgcctc gcccacccac
     1741 cactggtggg tcttcagggg tgggggcagt gtcttgtcca cccagctcag ggggcacctg
     1801 gggctctggc ttgtccccag gtggctccag gcgtccccca cgttccccag aacggacact
     1861 ttcgccttca agtggatact caagccaaag tggtacccca actctccctc ccaagggtct
     1921 ggcagttgcc cctgcttccc caggcaaggc tcagcccccc aaaccagatc gagtgacatc
     1981 ccttcgatct cctggggcct ctgtatcctc ttccctcaca tctctgtgtt cctcttcttc
     2041 agaccctact cctttagacc gctctggccc acaggcgtcc aaccccttga gtgacaggtt
     2101 cgtcatacct cctcatccta aggtgcctgc tcctttctcc ccaccacctt ccaagtccaa
     2161 gagctctaac caagctgctc ctgctctggc tgcccctgct gtggttcctg ggccagtttc
     2221 caccgccgac atcagtcccg catccccttc catgcctcag acaaccttga ctccagccca
     2281 ggaatctcct attgcctcca aagaccagtc acccccaccc tccccacccc catcttatca
     2341 tccaccccca ccacctacta agaagccaga ggtgcttgag gaggtcccac ctcctccaga
     2401 aactgtcgag atccttccag atccgagctg gccaccccca cccccacctg caccggagga
     2461 acaggacctg tcgatggctg actttccccc gcctgaggag gtcttcttct ctgcaggccc
     2521 tgagcttggt cccctggagc cctgtagctc agaggctgcc atcccctcag cagctagctt
     2581 gtcccagacc cctcctccag ctcccccagt tccccctcca gctagttctg tgtcggaacc
     2641 tctggccaag ctccctcaga aggactcggc aagctgcaag aacagtggga ctcccaggga
     2701 ggatgctggc acacctctgg tcacaccctc gctcctgcag atggtccggc ttcgctctgt
     2761 gggtgcctcc acaggggctc cgaatcctcc tccaggttca tcagcccctc agaagcctct
     2821 tcgaagagcc ctgtctggcc gggccagccc agtgcctgct gcctcctctg ggctccatgc
     2881 tgccgtccga ctcaaggcct ccagcctggc tgccagtgag agccctggaa atgctctgcc
     2941 cactggagca ccagagacag agccacggtc cccacagtct cctgcctcga aggccagctt
     3001 tatcttttcc aagggcacca aaaaactgca gcttgagaga cccgtgtccc ccgaggccca
     3061 ggccgacctc cagcggaatc tggtggctga acttcggagc atttcagagc agcggccttc
     3121 ccagacccag aagaagcctt ccaaggctcc cccacctgtg gctcgaaaac cctctgtggg
     3181 agtccctctt tcccccagtt tgcccagggc ggagtctctt gatgctccat ccaccaatgg
     3241 gctccctcac gctgaggaca ggactaaggg ggagctgaca gagaatggag gtgtgcagct
     3301 ggctgctaca gagaagatgg gcccccatgg ttcagatcca cagaagaaac tggtgtgacc
     3361 atcatcgctc aactggcact gctgatccat cccagggatt cagtctctca gggacccgag
     3421 cagctccaag gaagagagga tctggcagac acaacctaag acaggatgcc tgcggcctta
     3481 atctccacag cctgccatgt ttatgcaagc ctggtgttgc ccatcctcca agttacccct
     3541 cccttcatgc cttttcctga aaggattcac ctccagcagc ccttcagccc ttggccttag
     3601 cctcctcttg aagaaagtac ctgggggagt gggtggctgt gccccacccc ccaccccagc
     3661 ctcaaggcca cagaggtggg aggaaacaga atacgttttt cttttgtttc atgtctggaa
     3721 tcatgtttat tatagtccag aatcaaagca ctttgcaaag tggctgcatg tccatcctct
     3781 agggctcatg aaatcctatt ccaagagcct gtttacatgg tggcggcttc agtccttggt
     3841 agccagcccc cagctgggac cagtctgttc actctgccaa tccagcccac tcctttcctt
     3901 aattcttgga ggtgggcaag tctctcatcc ccacaggctt cccaggctgc tggcaggagt
     3961 gggtctgtgg aattccaaag cacaaaaggt actgtcgagg ctatccttcc tgtgcctcaa
     4021 cttaccacca accactctcc tgccttccag gtccatcagg tgctccttgt aaggggactc
     4081 atgggtgagg agagaaaagc cagagggggc ctgtgggcac tgcactcaaa gaccaaaaac
     4141 cagactagag tagggagcca tctgggatct tggcacgctg gcacctgtcc tgtgacactt
     4201 gattgtgctt gggtggatgg gcacggcttc agagacagga gctcatggga tgtgtccgtt
     4261 tcagattggc aggagacatt gccaaggtgt ggggagagcc tggcagggac ttaccgggca
     4321 gtgggcccag gcctattcct cagattcttt ccctgacctg tcttcactct ttggtgcatg
     4381 tcctttctga agctaccttt ctgccaggtg gagggagctg aggctttgtg gccaggatgg
     4441 gaagccaaag gcttaggcta gcccaggttc gtctctagaa gaggggataa gtggtgattc
     4501 ttcgagtgtg gctacccccc atagcagcct ctgctgtact aatctctctt cctggaatct
     4561 catggcttgg tttcagcttg taccaccctg aggtaagctg gagtctctgt agcctccaac
     4621 tgtgcctcct tcagggccac cccttgaatc ttctcaacag gagcctgagc ctggcaagag
     4681 accttgccat tagcttctct actaccaaga agagagcgac atgctctcac tattgacttt
     4741 gctgtcaaga actggggagg cagggtagag tccaggctcc ctacgccctc ttgttagggc
     4801 tgcttgtttg ttgccctgtc tttccttgtc cagtgtgtga tggggagctg ctgctgggtg
     4861 gacattactg ggaggaagga caatcaaagt aagcactgtt ctgccccggg atccaggact
     4921 gtcaggaccc cacggaacca ggccctggca gtagtctggg agctgtcagg gtggggaagt
     4981 agctgccttg tctttcctcc tcccgggtca caggagctct tgccctgcct tgggatcttc
     5041 tgtttcccca ctgggtgggc cagagtacaa agaaggaagg agagtctaag ggacaatctc
     5101 tttgtcctgt ggggtaaatg agcttgacct tgtgcaaatg gagagaccaa aagcctctga
     5161 tttttaattt gcataaaaat gttagaagag agaaatatat atatatttcc ttacttttga
     5221 gtctttgata tgtctatata aacaatcctt tccctattcc ttctcctctg aagcttgagt
     5281 gagacacatg acaaagctgt gtttcattaa aaggtattaa ttaaatgatt gaaacttg
//
