LOCUS       XM_039106057             530 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus similar to 40S ribosomal protein S16
            (RGD1561137), mRNA.
ACCESSION   XM_039106057
VERSION     XM_039106057.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051338.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039106057.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..530
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..530
                     /gene="RGD1561137"
                     /note="similar to 40S ribosomal protein S16; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 3 long SRA reads, 33 Proteins, and 94% coverage of the
                     annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:366030"
                     /db_xref="RGD:1561137"
     CDS             49..522
                     /gene="RGD1561137"
                     /codon_start=1
                     /product="40S ribosomal protein S16-like"
                     /protein_id="XP_038961985.1"
                     /db_xref="GeneID:366030"
                     /db_xref="RGD:1561137"
                     /translation="MWSKGPLQSVQVFGCKKTATAVAHCKRGNGLIKVNGRPLEMIES
                     RTLQYKLLEPVLLLGKERLAGVDIQVRVKGGGHVAQIYATRQSISKALVAYYQKYVDE
                     ASKKEIKDILIQYDQTLLVADPCRCESKKFGGPGARARYQKSYRKASLKDQGLPL"
ORIGIN      
        1 ccggtggcgg cgctgagcgg tgaggagttc gtgttcatac ttgtagctat gtggtccaag
       61 ggtccgctgc agtccgtgca agtcttcgga tgcaagaaaa cagccacagc tgtggcccac
      121 tgcaaacgag gaaatgggct tatcaaggtg aatggacgtc ccctggagat gatcgagtcg
      181 cgcacgctgc agtacaagtt actggagcct gttttgcttc tgggcaagga gagacttgct
      241 ggtgtggata tccaggtccg tgtgaagggt ggtggtcatg tggcccaaat ttatgctacc
      301 cggcagtcca tctcaaaagc tctggtggct tattaccaaa aatatgtaga tgaagcctct
      361 aagaaggaga tcaaagatat cctcatccag tacgatcaga ccctgcttgt agctgacccc
      421 tgtcgctgcg aatccaaaaa gtttggcggt cccggtgccc gtgcccggta ccagaaatct
      481 taccgaaaag ccagtctcaa ggatcagggt ttacctttgt aataaacatc
//
