LOCUS       XM_039097292            1331 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus similar to goliath-related E3
            ubiquitin ligase 4 (RGD1561134), mRNA.
ACCESSION   XM_039097292
VERSION     XM_039097292.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051353.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 1% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1331
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="18"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1331
                     /gene="RGD1561134"
                     /note="similar to goliath-related E3 ubiquitin ligase 4;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 2 Proteins, and 90% coverage of the
                     annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:307332"
                     /db_xref="RGD:1561134"
     CDS             1..816
                     /gene="RGD1561134"
                     /codon_start=1
                     /product="E3 ubiquitin-protein ligase RNF149-like"
                     /protein_id="XP_038953220.1"
                     /db_xref="GeneID:307332"
                     /db_xref="RGD:1561134"
                     /translation="MAAQRLPVAGVGAWNALAVLVLALSSRTGNIVVIMISYPKGREI
                     SDLVQKGIPVKMSIEIGTHHIQEFISSQSVVFAAIAFITMMIISLAWLIFYYRQRFLY
                     TGSQFGSQNHRKETKKVIGQLPLRTVKRGEKGIDVDAENCAVCIENFKVKGVIRILPC
                     KQIFHRICIDPWLLDHRTCPMCKLDVIKALGYWGNPEDAQELSIPEAAPGSVSVGNLS
                     VRVQDEDRSESNLPPSSSSEFGPHCPCLKEDAEEDTTLLGAGKSDPQHGGSIC"
ORIGIN      
        1 atggcagcgc agcggctgcc ggtggctggc gtgggagcct ggaacgcgct cgctgtgctt
       61 gtgctggcct tgtcatcgag aacaggcaac atagtcgtca tcatgattag ctacccaaaa
      121 ggacgggaga tttctgatct ggtgcaaaaa ggaattccag taaaaatgag catagagatt
      181 ggtactcatc acatacagga gttcatcagc agtcagtctg tggtgtttgc ggccattgcc
      241 ttcatcacga tgatgattat ctcattagca tggctaatat tctattatag acagcgtttc
      301 ctatatactg gctcacagtt tggaagtcag aatcatagaa aggaaactaa gaaggttatt
      361 ggccagcttc cactacgcac tgtaaagcgt ggagagaagg gaatcgatgt tgatgctgag
      421 aattgtgcag tgtgtattga aaactttaaa gtcaaaggtg ttatcagaat cctgccatgc
      481 aagcagattt ttcatagaat atgcattgac ccatggcttt tggatcaccg aacgtgtcca
      541 atgtgtaaac ttgatgtcat caaagccctc ggatattggg ggaaccctga ggatgcacag
      601 gagctaagca tcccagaagc tgccccagga agtgtttctg ttgggaatct gagtgtgaga
      661 gtccaagatg aggacaggag tgaaagcaac cttccaccat cttcgtcaag cgagtttggg
      721 ccacactgcc cttgtcttaa agaagatgca gaggaggaca caacattgct aggagccggc
      781 aagagtgacc ctcagcatgg aggatccatc tgttagtgcg gtcttcactg acagcctcac
      841 tgacagagcc ttggcttgaa tacagggcac tcagttttca ctctagggca tagtttgtac
      901 acttgaaaac aatggattct attttacttt acctttcaga ttcaggtttg atatacaaag
      961 ggctgagata ttttattcct aagagacttt aattagcctt catctattta tctactaaag
     1021 tatgacgtct atcataaatt tcgttgtatc aaactgtcac agaggtatgt ggaggggttg
     1081 tttctgagta ctagactagc ttctgtggta ctataaaaca agattctgtt tctcgggcct
     1141 tttagacaaa gctcactcag ttgaattgtg aaatgtagtt ccttattgat catatgaact
     1201 ttccctgaag cagactctag aacctgtaaa gtgagaaatc ttgccagggg cagtggtaca
     1261 cacctgcaaa ctcaggaggc cgaggcaaga ggatcttgac ttcaagccta ccctgggcta
     1321 catagcaaga c
//
