LOCUS       XM_039093914            2870 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus similar to Gene model 1082
            (RGD1560986), transcript variant X1, mRNA.
ACCESSION   XM_039093914
VERSION     XM_039093914.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039093914.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2870
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2870
                     /gene="RGD1560986"
                     /note="similar to Gene model 1082; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 3 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:292786"
                     /db_xref="RGD:1560986"
     CDS             470..2548
                     /gene="RGD1560986"
                     /codon_start=1
                     /product="inactive serine/threonine-protein kinase
                     TEX14-like isoform X1"
                     /protein_id="XP_038949842.1"
                     /db_xref="GeneID:292786"
                     /db_xref="RGD:1560986"
                     /translation="MHSQASRFPVELGSVRDPDAQVGRLHRLAMAGGPCWGLARLLRR
                     VVQVDGENSAGQTALFLSALLGHTSAVRLLLAFGANPNHRCLDGSTPTHAGASSGRGL
                     VLWHLLQAGGDLRLRDQQGRTPRDWAEQGDTKQRWEVSCVQGRVEPSRPARAPRLTLC
                     PTQVLELMQWCRTHMSALVQSGELAPSVSLSQLQASSGHSLCGSLPSLRLVQADRALR
                     QGQIRSSPKTPALGFGQLSSLQPPALISGIPVVDPKELVPTQGEPDRTYDSSSHTIMT
                     NLLWKGHPVTVRQLKSPESSPDVLLADLQHCSILHHPGLLLLMALSPSEDLSRLSLLF
                     EPVWLGSLYILLHSARLDEKCPPSLPGLLPGPLLLQVLEALLFLQSRCWAHGGLSSHA
                     VQLVRPGLAKVSHLEHGRPLHQPRLQPRLQQDCPQRDPNPGLPPPPELYPWLPLELIR
                     GDVPAPTSDLYSFCVLAQEVFTGELPWAGGEGLEVKAKLEAGQSPGLDPLLPAPYQAL
                     VQAGLGLEPADRWGSLQSTRYLLRKAMAKDSAPNVSSPLEWTTLSPVTLGSLPEHLYC
                     EGAPRARARARSRLVLPFPDPSQALGTPETTGHGRGQQNAAWDSGSSLTLGSSRSPSP
                     SPSPSPSPHCCPEPISIKPASEDRELTEGSLFSSLQEMDLLEEIMAEMQNKYNLEDKP
                     ALSPTLSPDS"
ORIGIN      
        1 ccagccatct gggccagagt ccaggcctag aactatttgg agatttcggg accttcagat
       61 ttttaccaca tccacatcac ctccatactc cacgtccagc ccccagcccc ctcctctttc
      121 actcagaccc catgtctgtt ctggaaccct aagatgtccc cagcccgcag accccaccag
      181 caccctcctg agccccctag ccctttgata cttcagagcc ttgcccaggc tcagttctgc
      241 ctgcagccct tgagtttccc ttgaaatgcc tgcccctgcc ctaaactccc ccttatcact
      301 tctgatccct tgggctccca gtctccagat gtacagctcc ctggcccggc ctaccagaca
      361 tctcttttcc catcagaccc tctcaagtcg ccttctcagc tagccctatt gtcctttaac
      421 tccaccctcc cctcaggagt ggaccccatc ccagaagctg acactgcaga tgcattccca
      481 ggcctcccgc ttcccggtgg agcttggctc tgtgagggat ccagatgccc aggtagggcg
      541 tctgcatcgc ctagcaatgg ctggaggccc gtgctggggc ctagccaggc ttctgcgcag
      601 agtggtccag gtagatggag agaactctgc tgggcagaca gcgctcttcc tgtccgcact
      661 actgggccat acttccgctg tgcgcctcct actggccttt ggcgccaacc ccaaccaccg
      721 ctgcctcgat ggcagcacac ccacgcacgc aggtgcctcc tcgggccgag gcttggtgct
      781 gtggcacctg ctgcaggcag gaggtgacct gcgtctgcgt gaccagcagg gtcgcacacc
      841 acgagactgg gctgagcagg gtgataccaa gcagaggtgg gaggtgagtt gtgtccaggg
      901 cagagtggaa ccatcaaggc cagcacgtgc tccgaggctg accctgtgcc ccacccaggt
      961 gctggagctg atgcagtggt gccggaccca catgtcagca ctggtgcaga gtggggagtt
     1021 ggcgcccagt gtgtccctga gtcagttgca agctagctct ggacacagcc tgtgtggctc
     1081 cctgccctca ctaaggctgg tccaggcaga cagggcactg aggcaagggc agatcagaag
     1141 ctcccccaaa accccagcat tggggttcgg ccagctgagc agcctgcagc caccagcact
     1201 gatatcgggc atcccagtag tagaccccaa ggagctggta ccaacccagg gtgagcctga
     1261 ccgtacctac gacagcagtt ctcataccat catgaccaac ctcctgtgga agggccaccc
     1321 agttaccgta cggcagctga agagccctga atccagccct gatgtgctat tggctgacct
     1381 tcagcactgc agcatcctgc accaccctgg cctgctgctg ctgatggcac tgagcccctc
     1441 agaggacctg tctagactga gtctgctctt cgagccagtg tggctgggct ccctttatat
     1501 cctgttgcat tctgcaagac tggatgagaa atgtccccca tccctgccag gcctgctgcc
     1561 tggccctctg ctgctacagg tgttggaggc cctgttgttc ctgcagtccc gctgctgggc
     1621 ccacggtggc ctgagttccc atgctgtgca gctagtgcgg ccaggcctgg ctaaggtgag
     1681 ccacctagaa cacgggcgtc cactgcacca gcccaggctg cagcccaggc tgcaacaaga
     1741 ctgcccccag agagacccaa atccagggct gcccccaccc cctgaactgt acccatggct
     1801 accacttgag ctgatccgtg gtgacgtgcc agcccctacc tcagacctct acagcttctg
     1861 cgtcctggcc caggaggtct tcactggaga gctgccctgg gctggaggag agggccttga
     1921 ggtgaaggct aagctggagg caggtcagag tccaggcctg gaccccttgt tgccagcccc
     1981 ataccaggcc ttggttcaag ctggactggg tctagagcct gctgaccgct ggggcagctt
     2041 gcagagcact cggtacctgt tgcgaaaggc catggccaag gactcagcac ccaacgtcag
     2101 ctccccacta gaatggacaa cactgtctcc tgtaaccctg ggttccctgc cagagcatct
     2161 gtactgtgaa ggggctccca gggccagggc cagggccaga tccaggcttg tgctcccttt
     2221 cccagaccct tctcaggctc tggggactcc tgagaccaca ggtcacggta ggggccaaca
     2281 gaatgcagcc tgggactccg gcagtagctt gactctaggc agtagccgta gccccagccc
     2341 cagccccagc cccagcccca gcccacactg ttgcccggag cccatctcaa taaaacctgc
     2401 tagtgaggat cgtgagctga cagaaggcag tctcttctcc agcctacagg agatggatct
     2461 gttggaggag atcatggcag agatgcagaa taagtacaac ctcgaagaca agcctgccct
     2521 gagtcctact ctcagcccag actcctaggg cgccctctca agactgaccc caaccctcaa
     2581 tgtttgcctc aaagccaaga gcatggaaaa tccccagttt gtcttcattc actggctcca
     2641 gcaacaaatt tctgccattt ttattcatta atgtcatcag gtggcttaat gggtggggtg
     2701 catgggagag gtgggcaaga actgtctccc caccccatgt acagggctgg aggctcctgg
     2761 agggaggagg acagtgattc agccttgccc cccattgtgc aagggcccca agagggaggt
     2821 gggggatggt catgccctgc aatccacgat cgggacacaa tgattttgga
//
