LOCUS       XM_039095023            1081 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2900016D05
            (RGD1560857), mRNA.
ACCESSION   XM_039095023
VERSION     XM_039095023.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051351.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039095023.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1081
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="16"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1081
                     /gene="RGD1560857"
                     /note="similar to RIKEN cDNA 2900016D05; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 EST, 4 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments"
                     /db_xref="GeneID:317036"
                     /db_xref="RGD:1560857"
     CDS             5..946
                     /gene="RGD1560857"
                     /codon_start=1
                     /product="splicing factor YJU2-like"
                     /protein_id="XP_038950951.1"
                     /db_xref="GeneID:317036"
                     /db_xref="RGD:1560857"
                     /translation="MSERKVLNKYYPPDFDPSKIPKLKLPKDRQYVVRLMAPFNMRCK
                     TCGEYIYKGKKFNARKETVQNEAYLGLPIFRFYIKCTRCLAEITFKTDPENTDYTMEH
                     GATRNFQAEKLLEQEEKRMQKEREDEELNNPMKVLENCTKDSKLEMEVLENLQELKDL
                     NQRQAHVDFEAMLLQHRLSQEQWQQQQEEEDERETVALLEEARYRRLLDDSDSEDEAP
                     PSRPQAAARPNPTAILDEVPKTKRKAEGLCRKAQLAGLVIPKKAKTEANRGSEQVRVP
                     TTGAPESRKVANPAPQTPGASSLSQLCAYGDSEDSDS"
ORIGIN      
        1 gaagatgtcg gaacggaaag ttttaaacaa atactaccca cctgactttg acccatcgaa
       61 gatcccgaaa ctcaagctac ccaaggaccg gcagtacgtg gtgcggctga tggccccatt
      121 caacatgagg tgtaagacat gtggagaata catctacaag gggaagaagt tcaatgcacg
      181 aaaggaaaca gtccagaatg aggcatacct gggtttgcca atcttccgtt tctatatcaa
      241 gtgcacacgc tgcttggccg agatcacctt caagacagac ccagagaaca cagactacac
      301 catggagcat ggggccacgc gcaacttcca ggctgagaag cttctggagc aggaggaaaa
      361 gcgcatgcag aaggagcgtg aggacgagga gctgaacaac cccatgaagg tcctagagaa
      421 ctgtacaaag gactctaagc tggagatgga agtgctagag aacctacaag agctaaaaga
      481 cctgaaccag cggcaggccc acgtggactt tgaggccatg ctgctgcaac accgcctatc
      541 tcaggagcag tggcaacagc agcaggaaga ggaagacgag cgtgagacag tggccttgct
      601 ggaggaggct cgttatcgaa ggcttctgga tgactctgac tcagaggatg aggctccacc
      661 ttcccgacca caggcagctg caagacccaa ccccacagcc atccttgatg aggtaccaaa
      721 gaccaagagg aaggcagagg gcctgtgcag gaaagcccag ttggcaggct tggttatacc
      781 aaagaaggca aagacggaag ccaaccgggg ttcagagcag gtccgggtgc ccaccactgg
      841 tgcccccgag agcaggaagg tggccaaccc tgcaccccag acacctggtg cctcctccct
      901 gagccagctc tgtgcgtatg gggacagtga ggacagtgac agctgagcat cagtgatgcc
      961 caccatggca tcatagacca agaaatgaag atggtatcaa gcaaacacct tcagccaagc
     1021 ctcaggacca ttctaccatg ggtcctggca gggtgtggag aagcaatgtc cccaggcacc
     1081 c
//
