LOCUS       XM_039078171            1373 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus similar to Brix domain containing 1
            (RGD1560842), mRNA.
ACCESSION   XM_039078171
VERSION     XM_039078171.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051341.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039078171.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1373
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="6"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1373
                     /gene="RGD1560842"
                     /note="similar to Brix domain containing 1; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 7 Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:299415"
                     /db_xref="RGD:1560842"
     CDS             290..1174
                     /gene="RGD1560842"
                     /codon_start=1
                     /product="ribosome production factor 2 homolog"
                     /protein_id="XP_038934099.1"
                     /db_xref="GeneID:299415"
                     /db_xref="RGD:1560842"
                     /translation="MDALDKVLKPKTKRAKRFLEKMESKLSENIKNAMMIKDGSVNAR
                     VTQVLRDMYARKKPYGVLYKNKNITRPFEDQTSLEFFLKKSDSSLFMFRSHNKKRPNN
                     LVIGRMYDYHVLDMIELGIEKFVSLKDTNTSKCPEGTKPMLIFAGNDFDVKEDHRNIK
                     NLIDFFRGPTVSNVRLSGLEYVLHFMALNGKVYFRSCKLLLKKTGCRRPRIDLEEMGP
                     SLELVVRRTHLASDKLYKLSMKVPKALKPKKRKNISQDTFGTTFGRIHMQKQDLSKLQ
                     TRKVKGLKKRPAENGIED"
ORIGIN      
        1 tggagaagga aaaaaaatta cccataaaat agtcaacatc cggggttcgg gattaggctc
       61 agtggtagag cacttgccta gcaagtgcaa ggcgctgaat tcggtcccca gctccaaaaa
      121 aaaaatgaaa aaaaaaaaaa aaaaaaaaag tcaaccccca acaacataca gtgttgataa
      181 atttaggaga agaaataaag attatgaatg ttgaatgcag atattaaaat aaaaaaattg
      241 gtttcggctt cccggaagtg ataggcattc gctaagagat ccagtagcaa tggatgcttt
      301 ggacaaagtc ctaaagccta aaacaaaaag ggctaagaga ttccttgaga agatggagtc
      361 aaaactcagt gaaaatatta agaatgccat gatgattaaa gatgggagtg tgaatgcaag
      421 ggtgacacaa gtactcagag acatgtatgc ccggaagaaa ccatatggag ttctctataa
      481 aaataaaaat attacaagac catttgagga tcagacctca ctggagttct ttttaaagaa
      541 gtcagactct tctctattca tgtttcgctc ccataataag aagaggccca ataatctagt
      601 aataggtcgt atgtatgact accatgtgct ggatatgatt gaactaggga ttgagaaatt
      661 tgtgtctctg aaagatacta acacaagtaa gtgccccgag ggaacaaagc ccatgttgat
      721 atttgctggt aatgattttg atgtaaaaga agaccacaga aatataaaaa atcttattga
      781 tttcttcaga ggccccacag tgtcaaacgt ccgtctgtct ggattagagt atgttctgca
      841 cttcatggca ctgaatggga aggtttactt tcgaagctgc aagctgctgc tgaagaaaac
      901 tgggtgcaga agaccccgaa tcgacctaga agagatgggg ccgtctttgg agctggttgt
      961 gaggaggaca cacttagcat cagacaaact ttataagctg tccatgaaag tgcccaaagc
     1021 tctcaagcct aagaagagga agaatatctc tcaggatact tttggtacaa cgtttggaag
     1081 gattcatatg cagaagcaag acctaagcaa actacagaca aggaaagtga aggggttaaa
     1141 gaagcggcct gcagagaatg ggatagaaga ctaggggaag aaattaaaga gaattaagaa
     1201 aaattaatga accttactgg cagcagcacc ttcttgtgtt atttactaaa gagaattgtt
     1261 ctaatcaagg ctgtttggtt ttctgataag actttgtggc ttatttggat agggtgaggg
     1321 tgtgacaaaa tttcacactg tagccaaggc tggcatcacc tcccaagtgc tgt
//
