LOCUS       XM_039100570            2425 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus similar to RIKEN cDNA B630019K06
            (RGD1560784), mRNA.
ACCESSION   XM_039100570
VERSION     XM_039100570.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051356.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039100570.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2425
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2425
                     /gene="RGD1560784"
                     /note="similar to RIKEN cDNA B630019K06; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 15 ESTs, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 115 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:363449"
                     /db_xref="RGD:1560784"
     CDS             226..1224
                     /gene="RGD1560784"
                     /codon_start=1
                     /product="F-box/LRR-repeat protein 17-like"
                     /protein_id="XP_038956498.1"
                     /db_xref="GeneID:363449"
                     /db_xref="RGD:1560784"
                     /translation="MGHLLSKEPRNRASQKKPRCCSWCRRRRPLIRLPGRTPTKSSPQ
                     PAAAARNRDCFFRGPCMLCFIVHSPGGPAPAGPEEEPPLSPPLPRDTAYAASPLQHLE
                     PRYAALAAEDCAAAARRFLLSSAAAAAASSASSPATRCKELGLAAAAAWEQQGRSLFL
                     ASMGPLRFLGPPAAVQLFQGLPPQSEHPLAPDLVCNWKDDEVPDYTFCNQPRCGGGGG
                     GGGGGGGGGGPVGGGGLLLQPLDAGYCQAPEQPLPVMGSRPTSPASECSFIEATGDTL
                     RAGSITPWSSQQQAESRNIDCQRLPDPCGLLRDSPPEPLDINQLPGSIVLEVDMDD"
ORIGIN      
        1 ccctcttgga gtgggtggtg tgctcctgcg gctcctgttg tgtcgcaggc acacgcgccg
       61 ttggcggagc tgcagataaa gtggtctgag caggactgcc attgccccta ccaccgcgct
      121 gactgaccga accgagcggc ctagcgaccc gactcgcttc ctccctcgag tccccacagc
      181 tcgggcccat ctttctccag gcttccgggc ccaaaggccg tctttatggg ccaccttctt
      241 tcgaaggagc ctcggaaccg tgcgagccag aagaagcctc gttgctgcag ctggtgtcgc
      301 cgccggcgcc ctctcatccg actgccgggc cggacgccga ccaagtcgtc cccacagccc
      361 gcggcggcgg cccgcaaccg ggactgcttc ttccgcgggc cctgcatgct ctgcttcatc
      421 gtgcacagcc ccggcgggcc cgcccccgcc ggcccagagg aggagccgcc gctgtcgccg
      481 ccgctgccgc gggacacggc ctacgccgcc tcccccttgc agcacctaga gccgcgctac
      541 gcggccctgg cggccgagga ctgtgccgcc gctgcccgcc gcttcctgct gtcgtcggcc
      601 gccgcagccg ctgcctcctc ggcctcttct cctgccaccc gttgcaagga gctggggctg
      661 gccgccgcgg ccgcctggga gcagcagggc cggagcctct tcctggctag catggggccc
      721 ttgcgctttc tggggccgcc ggccgccgtg cagctcttcc aggggctgcc gccacagtcc
      781 gagcatccct tggctcccga cctagtgtgc aactggaagg acgacgaggt tcccgactac
      841 accttctgca accagccgcg ctgcggcggc ggcggcggcg gcggcggcgg cggcggcggc
      901 ggcgggggac ctgttggggg aggtggcttg ctgctgcagc cgctagatgc tggctactgc
      961 caggccccag agcagcccct gccagtgatg ggctccaggc ccacctctcc tgcctcagag
     1021 tgttccttca ttgaagccac cggggacact ctccgggctg ggagcatcac cccctggtcc
     1081 tcccagcagc aggcggaaag ccgcaacata gactgtcaga ggctccctga tccctgtggt
     1141 ttacttaggg attcgccccc agaaccccta gacatcaacc agctgccagg gtccatcgtg
     1201 cttgaggtgg atatggacga ctaggcccag ggatgcgagt ttccccccaa ccccgccccc
     1261 gcccctcgcc ccccttcccg aggctgtctc tgtcctcccc tgtgcaagga ggagtgggat
     1321 tccctgacag cccgggggtc gcttgaaggg gagactgggc aaccagtcag ccccgtgctt
     1381 aaggcctgtt ttgaagtaga aaagcttgga gtctgctgaa tgccttgtag tagattaggt
     1441 ctgtttccac aattcaggat tcatttattg cattagcaaa tcccgatata gaaactatta
     1501 gttttctgtg gaataaatat atgcatactt gagcaatttc tatttggtgg gtaacagctt
     1561 tacataccga tgtttgaaaa gttttcaaac tgtcttcagg tttgatcgct gctagttagt
     1621 gccaataact tacaattaag catgtaccat gatccgtcac tgtaccagag ctttatatat
     1681 acaaatctca tgggttccct ccatttgatg ctgtgagata agtcctgtta atatttaccg
     1741 tattcaaaaa agaaactgac atgccagtgt tttgggacag atgacttaca ccagtgagcc
     1801 aggaagaaga ggaatttagt ggttgagtga ctggttcaag gtcacaccca taaactaaag
     1861 agcgaatctg ggtcttgaac tagagacttt tggccagctt gacttgaaaa acaaactaac
     1921 tgtgttgtgt acgctgctgt tctttcgtct gtccttacct ttatgtgcaa tgaattacca
     1981 gaagtcggaa gtcttatatg ttgggggttg ggtgagttaa gaagtgaagt gcctggtggg
     2041 gattttatgt cgctgtcagt tactaagcaa agtgtcccgc tttgtcagcg ctagaaataa
     2101 actttgtgat agtctgtact aagttattaa ctcccctttc ccttgtttct tgtctttgtt
     2161 cccacactct tttacctgag gttataaaat gagaacttga gttttcagtg tggacgatat
     2221 ttaactagca ctagccagaa ataaccttca ggagaatgtg gctactttca ttgttactga
     2281 attaactgcc aatgaattgt aaatgttact gtcacatcag tgtaccttat ttgagtagac
     2341 ttttaacacg tgtaattgtg tgtttgaatc tgttttactg tgacattgat gttcttgtga
     2401 aaaatacagc agaagactga acaaa
//
