LOCUS       NM_001401858            2820 bp    mRNA    linear   ROD 08-APR-2024
DEFINITION  Rattus norvegicus sperm motility kinase 2A like 1 (Smok2al1), mRNA.
ACCESSION   NM_001401858 XM_039101518
VERSION     NM_001401858.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2820)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000001.1.
            
            On Feb 28, 2022 this sequence version replaced XM_039101518.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360181.1674877.1,
                                           SRR26360181.1219127.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on expression, longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-899               JAXUCZ010000001.1  57841320-57842218
            900-2476            JAXUCZ010000001.1  57847857-57849433
            2477-2820           JAXUCZ010000001.1  57849869-57850212
FEATURES             Location/Qualifiers
     source          1..2820
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q12"
     gene            1..2820
                     /gene="Smok2al1"
                     /gene_synonym="RGD1560718"
                     /note="sperm motility kinase 2A like 1"
                     /db_xref="GeneID:499027"
                     /db_xref="RGD:1560718"
     exon            1..899
                     /gene="Smok2al1"
                     /gene_synonym="RGD1560718"
                     /inference="alignment:Splign:2.1.0"
     exon            900..2476
                     /gene="Smok2al1"
                     /gene_synonym="RGD1560718"
                     /inference="alignment:Splign:2.1.0"
     CDS             926..2431
                     /gene="Smok2al1"
                     /gene_synonym="RGD1560718"
                     /note="sperm motility kinase 2; sperm motility kinase
                     2B-like"
                     /codon_start=1
                     /product="similar to putative protein kinase"
                     /protein_id="NP_001388787.1"
                     /db_xref="GeneID:499027"
                     /db_xref="RGD:1560718"
                     /translation="MSFRSKRESERLRSQGSSCTESFCSQYLVLNTIGHGFHAAVKLA
                     VHRLTGTPVAVKMLLKRQQWCQQVTSEVEIMMRINHPNIVSLIQVIDTEKITYLIMEL
                     AKGNQLYSRIKEAGHLQEDEARGIFRQLLSAVGYCHKEGIIHRDLKPDNILVDTKGRI
                     KIVDFGSATQVRPGQKLRTHYGTYAFSAPELFLGKFYEGPKVDVWALGVILYYMTVGK
                     LPFEAVRLPLLRRQVVLGTYAEPLGLSEELQDLLSLLMKVNSQQRPTIPDLLTHPWLK
                     IDSEGFPQPCKELIPLRPDPAILRAMQDIGFEAQEVKDSLDQKKFNQSMACYYFLEKQ
                     ALQECDIPTRPHPCMTPFPTLDYPATSVRGLRRRGSEPRWLGSSSDSQGSDLGQTASH
                     GLVKRASWPGGLLCRPHQITPTVELTHRISISDPCFYSVHSKGKKTINTKSTEDKSSA
                     SAEVKPVASRPWPKRFRGWVKNIRNGLMNLCCCIPSRKKPPLGHNRVVPQK"
     exon            2477..2820
                     /gene="Smok2al1"
                     /gene_synonym="RGD1560718"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 agtaacaaca gaccacacaa cttagtgcga tatgcagtta atgattagct gggcatgaga
       61 aaggtcctct gtaataatgt aagatggctg gcgacaggta ttaaagtgga tagagtaatg
      121 tcagaaaggc agcagccacc tccgtcttaa agagaagatt acacacacac acacacacac
      181 acacacacac acacacacac acacgtgtgt gtgtgtgtat aattaatata tatatatgta
      241 tctgtagtat attcttaaac ccatagttga aatgcaaaag ggacccatgg aagatagaca
      301 taaggatttt aaagcaggag gcacagcaag ccttcaaaca gagaactaag gacagcaaac
      361 catcctacag gctttgattt ctaaaagcct aaaggctccc catagccaac ctaagccaga
      421 gccttggagt ccttcccaac catgcaagga caggtcctat tgtgacctca tgaggagcga
      481 gtgtgaggcg gtccagccaa cagatgttaa gctgtagcca ggcctggatt tccttgagtg
      541 cgtttagagg agtggtggag tggagacttt ggtgattttg gtggatctag tgagcagtgt
      601 gtggattttg catttgattg atttgtgtgt agcttgtgta tgtgtgtcta ggtcagtgtt
      661 tgtgtggaca gttgcttttg tgtgtgtgtg tgtgcgcgtg tgtgcgtgcg tgtgtgtgtg
      721 tgtgtgtgtt ggtatacttg gtggtgactg tgagtgcatc tgtgagtgtg ggtgtgtgtg
      781 tgtgcccaac tgtgtgtgag tgtctgttgt gccctgttgg tgcactagtt gtaggtgtga
      841 gaacacctgt gtgaggaaaa gttttgaggc cggcagtcag cttggccatt gtttctaagg
      901 tagcatttat actctgttac ctccaatgag cttccggagc aaacgggagt cagaaaggct
      961 ccgatctcag ggcagctctt gcacagagag tttctgctct caatatttgg ttttgaatac
     1021 catcggccat ggtttccacg cggccgtgaa gttggccgtg caccgcctca caggtacccc
     1081 cgtggctgtc aaaatgctcc tcaagagaca acagtggtgc cagcaggtca catctgaggt
     1141 agaaatcatg atgaggatca accacccaaa tattgtatct ctcatacaag tcattgacac
     1201 tgaaaagata acatacctca tcatggagtt ggccaagggg aaccagcttt attctcgcat
     1261 caaagaggct ggccatctgc aggaggatga agcacggggc atattcagac aattattaag
     1321 tgctgtggga tactgccata aagaaggcat tatacaccgg gaccttaaac ccgataatat
     1381 actagtcgat accaagggaa gaattaaaat cgttgatttt ggctctgcca ctcaagtgcg
     1441 gcctgggcaa aagttgagaa cgcactatgg gacttatgca ttttctgctc ctgagctgtt
     1501 cctcgggaaa ttttatgagg gccccaaggt cgacgtgtgg gccctaggag taattcttta
     1561 ttatatgaca gttggaaaac tcccatttga ggctgtcagg ctaccactac tccgaaggca
     1621 ggttgtgtta gggacttatg ctgaaccact tggcctgtca gaagagctac aagacctgct
     1681 gagtctttta atgaaagtga attcccagca gaggcccaca attcctgacc ttttgactca
     1741 tccctggctt aagatagact cagaggggtt cccacaacct tgtaaggaac tcatccccct
     1801 caggccagac ccagccattc ttagagcaat gcaggacatt ggatttgaag cccaagaggt
     1861 taaagactcc ctcgatcaga agaaattcaa ccaaagtatg gcttgttact actttttgga
     1921 aaagcaggct cttcaagagt gtgacatccc aacccggcct catccatgca tgaccccatt
     1981 cccgaccctt gattaccctg ctacttcagt gcgagggctc agaaggcgag gaagcgagcc
     2041 cagatggctc gggtcatcct ctgatagtca aggttctgac ctcggccaga cagctagtca
     2101 tggattagtc aagagggcca gttggcctgg cggtcttctc tgcaggccac atcagataac
     2161 acccacagtg gagctaaccc acagaatttc tattagtgac ccctgctttt attcagtgca
     2221 cagcaaaggc aagaagacca tcaacactaa aagcacagaa gacaaatcca gtgcctcagc
     2281 agaggttaag cctgtcgcaa gcaggccctg gcccaaaaga tttagggggt gggtcaagaa
     2341 catccgaaat ggcctgatga acctgtgttg ctgcattccg tccagaaaaa aacctcccct
     2401 ggggcacaac agagttgttc cccagaaatg aagaacatgg aaggaatcca gagagcaagc
     2461 atccaacact gcccagaaga tcactagagg atgccggatg ctgcatctct gcagtcccag
     2521 tgttgaagag gatccacgtg tggacacgga cctgcagaag ggagcgctgt gagagctgtc
     2581 accttccagg tcagctgtgg aaggatgaaa gcaaatgaag agatgccagg tggcaagaga
     2641 gcacctcaaa ggcatcactc ttcctggtgg aggttgaaaa ccagtccaaa gctggtaaag
     2701 accagagccc ttttgccgac cagggtcaca tcacacacct cctcttggca caagttctca
     2761 cctcactcct aattgaagac ataaggcttc ttgatggttt gtctgactct cagaataaaa
//
