LOCUS       XM_039087188             724 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus similar to Proteasome subunit beta
            type 3 (Proteasome theta chain) (RGD1560689), mRNA.
ACCESSION   XM_039087188
VERSION     XM_039087188.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051345.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039087188.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..724
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..724
                     /gene="RGD1560689"
                     /note="similar to Proteasome subunit beta type 3
                     (Proteasome theta chain); Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 25
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:363591"
                     /db_xref="RGD:1560689"
     CDS             291..647
                     /gene="RGD1560689"
                     /codon_start=1
                     /product="proteasome subunit beta type-3-like"
                     /protein_id="XP_038943116.1"
                     /db_xref="GeneID:363591"
                     /db_xref="RGD:1560689"
                     /translation="MSTVANLLYETWFGPYYTEPVIAALDPKTFKPFIYSLDLIGCPM
                     VSVDFVVSGTCSKQMYGMCESLWEPNVDLEHLFETISQAMLNAVDPDAISGMGVIVHI
                     IEKDKITTRTLKARMD"
ORIGIN      
        1 cccatttgta ggcaacacag cggagactgg ggtcctactc ctagaatgga ggggccatca
       61 tggccatgaa gggaaagaag tgtgtggcca ttgctgcaga caggtgtttc gggatccagg
      121 cccaaatggt gaccaccaca gacttccaga agatccttcc catgagtgac aggctctaca
      181 taggcctggt cggcctggcc actgatgtcc agacagttgc ccagcgtctc aagttctgac
      241 tgaacctgta tgagctgaag gaaggatggc agatcaaacc ttacaccctc atgagcaccg
      301 tggccaacct cttgtatgag acatggtttg gtccctacta cacagagcct gtcattgctg
      361 ccttggaccc caagaccttt aaacccttca tttactctct ggacctcatt ggctgtccca
      421 tggtgagtgt tgactttgta gtcagtggca cctgctccaa gcaaatgtat gggatgtgcg
      481 agtctctctg ggagcccaac gtggatctag aacacctgtt tgaaaccatt tctcaggcca
      541 tgctgaatgc tgtggaccca gatgccatat caggcatggg agtcattgtc catatcattg
      601 aaaaagacaa gatcactacc aggacgctga aggccaggat ggactaacct cctgtgctct
      661 ggtcctgtct cccttttgtt gtttttcttt ttaataaaat cgcctttctt taaaaaaaaa
      721 aaaa
//
