LOCUS       XM_039095459            3762 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus similar to ribosomal protein L27a
            (RGD1560633), mRNA.
ACCESSION   XM_039095459
VERSION     XM_039095459.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039095459.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3762
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3762
                     /gene="RGD1560633"
                     /note="similar to ribosomal protein L27a; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 14 Proteins, and 97% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:292474"
                     /db_xref="RGD:1560633"
     CDS             2115..2561
                     /gene="RGD1560633"
                     /codon_start=1
                     /product="60S ribosomal protein L27a-like"
                     /protein_id="XP_038951387.1"
                     /db_xref="GeneID:292474"
                     /db_xref="RGD:1560633"
                     /translation="MPSRLRKTGKLQGYVSHGHGLIGKDRKHPGGLGNAGGVHHHRIN
                     FDKYHPGYFGKVGMRHYHLKRNQSFSPTVNLDKLWTSVSQQTRVNAARNKTGAAPIID
                     VVRSGYHKVLGQGKLPKQPVMVKAKFFSRRAEEKVKGVGSACVLVA"
ORIGIN      
        1 tatttttatc tctgtctact tcattggcga taacactaaa tccagggcaa aggggggaga
       61 cctagctgcc agcataggga gcaagggatt ttttttttct gaggagagtg gggagtgtaa
      121 cctgaaatct tagccataat atacactcac tacacttctg tttcccctcc cccacatagc
      181 gctgtgccct ctgctcctcc tcagttactc tcactcactt ttgctttcct gtttcaagct
      241 tgactctccc tccgtgtctt ctatttgagt taaaacagtc gcccctcctc actggtgaat
      301 gtcattgctc ttttcccttt ccagaacatt cttcccttcc cagttctagt tctgctgctt
      361 ctcccctaaa cacctcaaac tccttctgtg acctctagtg aagtttggtt ctttgacagt
      421 gtggcccgtt tgccctcacc cttgtccacg gactgccctg ctttgctttg ttaacgtgca
      481 ctccttgtta cacattctgt cagccctttg ctctttttct gcatgcctgg accaccctcc
      541 atttcactga tccgttatga tcaggccaca gggccatttt ctcttgaatg ctttctatag
      601 ccagaatgat gaattgctcc caaaattccg agctcctcaa catgagagac ccttgtctat
      661 ccttgtcaca ccagcatcta ccataatgcc aatcaggtag aaagcgctca ttagtatttt
      721 tcgtaaggca tcaaaatcca agagttctta ttcatgtttg tttacactga gaagtcgtca
      781 caacacctgt gtgcacaaaa ggctctctat agttcatatt ttattatctg tatgtcagtc
      841 acagctgttc aggagctgtg gacatttggc ttggcatgtc tccaaaacta taaatttatg
      901 tcttactttt aaatgcgcta atactcgatt ggaaggctgt cgatgattct gattcttaaa
      961 cctggaattt ctatttaact tttataagga ctctcacttg ctatatatga gtgtgccttt
     1021 cttgaggcct tcttggatgc tcctggatag aaccatgtgg cctcctgtgg actttacctt
     1081 agccatgaag acttctgaca gccttcctct gatttggaga catttgaaga atctagcaca
     1141 gtgctgtccc taggtttagt tctgggcaac agatgcagta aaacatgcaa acagctacga
     1201 atggtgcttg aagtagcccg tgtcggagac aggcaggaaa gaaggacaga gagcaaacac
     1261 tcttggtggc cagtaaccca tgtagctgac ccattcaaca gatggtaaag aagagtgctc
     1321 ggagaagcgc cttgcagtta tacagacaaa attgaaagtg agggaagaga ctacacttct
     1381 gcaagaggtc ctgctcacag tgaactgtgt gatcgcagtc tccctggagc ctgagtgtga
     1441 aacctgaatt aagccgtctg gcagcctttt cccggccctt gtgctccatc ttgagaattg
     1501 atgaggtgct tagcagaatg aatgacacaa ggctctgcct cgaagctgac agtttataag
     1561 atgatacatc acaaaaggag caaaattgct aacttaatgc atgctcgacc tgctctttcc
     1621 atggaagctg atgaaatacc accgtactta ccaatcaagg aagcagtttg tgagaaatta
     1681 atatctccta taagaattga tcctaaccct acagacacac tataaagcac ccctgaggac
     1741 tcactgtggg agccagctgg acacctagct gttacctgta gaatgcacac acatgtgtac
     1801 atgcgtgcaa tagttgtggg gctttcctga catagtgtag ggccttattg tctgggcata
     1861 tttttatcat gctatttgat ttctttgtcc atgtgcagat tttcctttgc ctctgaagaa
     1921 aaacaatcta aaaggttatt tcgggaagtt atttgaaagg aagaagcagc agctttgggc
     1981 ctggagtgta gccttgtgag tggcagggca tgcatttaac acgtatgagg acctgttttc
     2041 cattctgaga gaagatagag tttacatgga agattaaaat acatgcatgg tgctctttct
     2101 tttctgccac cgccatgcca tccagactga ggaagaccgg gaaactccag ggctacgtga
     2161 gccacggcca cggtctcatt ggtaaggacc gcaagcaccc aggaggtctc gggaatgccg
     2221 gaggcgtgca tcaccacagg atcaattttg acaaatatca tccaggttac ttcggcaaag
     2281 ttggcatgag gcattaccac ttgaagagga accagagctt ctccccaacg gtcaacctgg
     2341 ataaattatg gacgtcggtc agccagcaga cacgggtcaa tgcagcaaga aacaagactg
     2401 gagctgctcc catcattgac gttgttcgat caggctacca caaagttctg gggcagggga
     2461 agctccctaa gcagcctgtc atggtgaagg ccaaattctt cagcagaaga gctgaagaaa
     2521 aggtaaaggg tgttggaagt gcctgtgttc tggtggctta aaaccacttc agaggttaat
     2581 taaatgcaaa catttaaaaa aaaatacatg tatggtgact tgtgcggcta tgttgccttt
     2641 gaaatcacct ccctgctgtc ttgtgtgact taaatttcat ctacgtgaac cttctttgct
     2701 cctcagactt cggataaatg aactaatttt tcaagtcgtg attgtttcta gatccccaaa
     2761 tcctcctcac gccccgtatt ctgaaacgag ctgcactatt ttatattctg cattatgttc
     2821 gcacaggtaa tgtgacccta ggtaaaattg tctccgtgtt cagtgagatg caagccaaac
     2881 atgagtcaat ggcatgaaat tagacaacgc caagtcaggg agcacgatgg tgaggaatac
     2941 actaccagac tcacatcctg tggtggtttg gatgagaatg ttcctcgtgg actgtcagac
     3001 tcatttcccg agcgccgttc agcctttttg agagggacaa ttaaatgcag ctctgtagat
     3061 gagaatcata ttaatgtgac cgccccttct gcatttccct gcctccagtt tttggactag
     3121 tgtcacacgg atacacctga gcttgtctct cagatttcag tagaaatgaa aacagtgaaa
     3181 ctaatgtgag ctggggttcg gctactggga taaaggcatt gctagtcttg aagaagccat
     3241 cactctccaa gtgtatatta gtttgcttct tggtgctgtg attaaaaaaa aaaaaaaaca
     3301 ccttgatcaa agaagcatac aggagaaaga attcacgtct acttaatggt tccagaggga
     3361 gaagcgcaga gcatcctggg gactcagggc agcaagcggc aagggcagga agtggagaga
     3421 tcacatttta aactaaagag atgaagtaaa ggcacgaaac cagaaataga gcaaagctat
     3481 gagtcctcaa agcccacctc taccgacact tgtctacgaa ggcctctctt cctaaacctg
     3541 ccaacagtgc caccaaccgg agatcaagtg ttcagaccca tgagcctatg ggggagcgct
     3601 tctcatttaa accgccacac agaacaggag actacgctgt attgttggct gagtgactgt
     3661 agagtgtcct aactataagg tgatttgggg ttgggtagta tacttatttt tataatcttt
     3721 tctatttttt attcctgaac accagtatgt cagtttatta tt
//
