LOCUS       XM_039103506            1325 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus similar to Phosphoglycerate kinase 1
            (RGD1560402), mRNA.
ACCESSION   XM_039103506
VERSION     XM_039103506.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051337.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039103506.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1325
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1325
                     /gene="RGD1560402"
                     /note="similar to Phosphoglycerate kinase 1; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 2 ESTs, 51 Proteins, and 99% coverage of the annotated
                     genomic feature by RNAseq alignments"
                     /db_xref="GeneID:499525"
                     /db_xref="RGD:1560402"
     CDS             35..1252
                     /gene="RGD1560402"
                     /codon_start=1
                     /product="phosphoglycerate kinase 1-like"
                     /protein_id="XP_038959434.1"
                     /db_xref="GeneID:499525"
                     /db_xref="RGD:1560402"
                     /translation="MSLSNKLTLDKLDVKGKQIVMRVDFSVPMKNNQITNNQRIKAAV
                     PSIKFCHPGRPDGVPMPDKYSLEPVAAELKSLLGKDVLFLKDCVGSEVENACANPAAR
                     TVILLENLHFHVEEEGKGKDASGNKVKAEPAKIDAFQASLSKLGDVYVNDAFGTAHRA
                     HSSMVGVNLPQKAGGFLMKKELSYFTKALESPERPFLAILGGAKVEDKIQLINNMLDK
                     VNEMIIGGGIASTFLKVLNNMEIGTSLCDEEGAKIVKELMVKAEKNGVKITLPVDFVT
                     ADKFDENAKTGQATVASGIPAGWLGLDCGTEGSEKYAETVARAKQIVWNGPVGVFEWE
                     AFARGTKSLVDEVVTAASRGCITIIGGGNTATCCAKWNTEDKVSHVSTGGGASLELLE
                     GKVLPGVDALSNV"
ORIGIN      
        1 cctctgggcc tctcaacctc acggtgttgc caaaatgtcg ctttctaaca agctgacttt
       61 ggacaagctg gacgtgaagg ggaagcagat cgtgatgagg gtggacttca gtgttcctat
      121 gaagaacaac cagataacga ataaccaaag gatcaaggct gctgtcccaa gcatcaaatt
      181 ctgccaccca ggccgtcctg atggtgtgcc catgccggac aagtactcct tagagccagt
      241 tgctgcagaa ctcaaatctc tgctgggcaa ggatgttctg ttcttgaagg attgtgtggg
      301 ctcagaagta gagaatgcct gtgccaaccc agcggctagg actgtcatcc tcctggagaa
      361 cctccacttc catgtagagg aagaagggaa gggaaaagat gcttctggga acaaggttaa
      421 agctgagcca gctaaaattg atgctttcca agcctccctg tccaaactcg gagatgtcta
      481 tgtcaatgat gcttttggga ctgcacacag agcccacagc tccatggtgg gtgtgaatct
      541 gccacagaag gctggtggat ttttgatgaa gaaggagctg agctacttca ccaaggcttt
      601 ggagagtcca gagcgaccct tcctggctat cttgggagga gctaaagttg aagacaagat
      661 ccagctgatc aataatatgc tagacaaagt caatgagatg atcattggtg gtggaatagc
      721 ttctaccttc cttaaggtgc tcaacaacat ggagattggc acatctctgt gtgatgaaga
      781 gggagccaag attgtcaaag agctcatggt caaagctgag aaaaatggtg tgaagattac
      841 cttgcctgtt gactttgtca ctgctgacaa atttgatgag aatgccaaga ctggtcaagc
      901 tactgtggcc tctggtatac ctgctggctg gctgggcttg gactgtggta ctgagggcag
      961 tgagaaatat gctgagactg tggctcgagc taagcagatt gtttggaacg gtcctgttgg
     1021 ggtatttgaa tgggaagcct ttgccagggg aaccaagtcc ctcgtggatg aggtggtgac
     1081 agccgcttct aggggttgca tcactatcat aggtggtgga aacactgcca cttgctgtgc
     1141 caaatggaac acagaggata aagtcagcca tgtgagcact gggggcggtg ccagtctaga
     1201 gctcctggaa ggtaaagtcc ttcctggggt ggatgctctc agcaatgttt agtattttcc
     1261 tgcctttggt tcctgtgcac agcccctaag tcaacctagt gttttctgca tctccatctg
     1321 gtgat
//
