LOCUS       NM_001401544             464 bp    mRNA    linear   ROD 30-MAR-2024
DEFINITION  Rattus norvegicus NELL2 interacting cell ontogeny regulator 1
            (Nicol1), transcript variant 2, mRNA.
ACCESSION   NM_001401544 XM_017599117
VERSION     NM_001401544.1
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000014.1.
            
            On Feb 15, 2022 this sequence version replaced XM_017599117.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360186.2340979.1,
                                           SRR22399492.1108088.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN12840108, SAMN12840129
                                           [ECO:0000348]
            ##Evidence-Data-END##
            COMPLETENESS: full length.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-120               JAXUCZ010000014.1  80994094-80994213   c
            121-263             JAXUCZ010000014.1  80993839-80993981   c
            264-352             JAXUCZ010000014.1  80993595-80993683   c
            353-464             JAXUCZ010000014.1  80992697-80992808   c
FEATURES             Location/Qualifiers
     source          1..464
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="14"
                     /map="14q21"
     gene            1..464
                     /gene="Nicol1"
                     /gene_synonym="RGD1560394"
                     /note="NELL2 interacting cell ontogeny regulator 1"
                     /db_xref="GeneID:289728"
                     /db_xref="RGD:1560394"
     exon            1..120
                     /gene="Nicol1"
                     /gene_synonym="RGD1560394"
                     /inference="alignment:Splign:2.1.0"
     exon            121..263
                     /gene="Nicol1"
                     /gene_synonym="RGD1560394"
                     /inference="alignment:Splign:2.1.0"
     CDS             143..418
                     /gene="Nicol1"
                     /gene_synonym="RGD1560394"
                     /EC_number="2.3.1.17"
                     /note="neuropeptide-like protein C4orf48 homolog"
                     /codon_start=1
                     /product="NELL2-interacting cell ontogeny regulator 1
                     precursor"
                     /protein_id="NP_001388473.1"
                     /db_xref="GeneID:289728"
                     /db_xref="RGD:1560394"
                     /translation="MAPAPRSLLSPPILLLLLLLSLALLGARAEPAAGSAVPAQSRPC
                     VDCHAFEFMQRALQDLRKTAYSLDARTETLLLQAERRALCACWPAGR"
     exon            264..352
                     /gene="Nicol1"
                     /gene_synonym="RGD1560394"
                     /inference="alignment:Splign:2.1.0"
     exon            353..464
                     /gene="Nicol1"
                     /gene_synonym="RGD1560394"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 tttcccgagt cgcccgcgct gctgttcgcg gttctgtgga ccgcggtaag ggtggggtgg
       61 tgtccgcggg ggcaccggca gggtgggact gggctaagcg cacctgagct cgcgggatac
      121 ggcggcctgg gctccctctg ccatggcccc cgcgcccagg tccttgctgt cgccgccgat
      181 tttgctgctg ctgctgctgc tgagcctggc gctgctaggc gcccgcgctg aacccgccgc
      241 cgggagcgct gtccccgcgc aaagccgtcc gtgcgtggac tgtcacgcat ttgaattcat
      301 gcagcgcgcc cttcaggacc tacggaaaac cgcctacagc ctggacgcac ggacggagac
      361 cctcctgctg caggctgagc gccgggctct gtgtgcctgc tggccagctg gacgctgaag
      421 atcattggcc agtgatgttc cctgtcaata aatgcctgct agca
//
