LOCUS       XM_234957               2820 bp    mRNA    linear   ROD 22-FEB-2024
DEFINITION  PREDICTED: Rattus norvegicus NLR family, pyrin domain containing 4A
            like 1 (Nlrp4al1), mRNA.
ACCESSION   XM_234957
VERSION     XM_234957.6
DBLINK      BioProject: PRJNA1074393
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_086025) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Jan 21, 2021 this sequence version replaced XM_234957.5.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_036323735.1-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/09/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2820
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /bio_material="RGD 61498"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /sex="male"
                     /tissue_type="kidney, spleen, liver"
                     /geo_loc_name="USA: Wisconsin, Milwaukee"
                     /lat_lon="43.05 N 88.04 W"
                     /collected_by="Rebecca Schilling, Melinda Dwinell"
     gene            1..2820
                     /gene="Nlrp4al1"
                     /note="NLR family, pyrin domain containing 4A like 1;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 13 Proteins"
                     /db_xref="GeneID:299656"
                     /db_xref="RGD:1560291"
     CDS             1..2820
                     /gene="Nlrp4al1"
                     /codon_start=1
                     /product="NACHT, LRR and PYD domains-containing protein
                     4A"
                     /protein_id="XP_234957.4"
                     /db_xref="GeneID:299656"
                     /db_xref="RGD:1560291"
                     /translation="MASFFSDFGIMWYLKELNKREFVKFKEFLKQEILQFGLTISCTE
                     VKRATREGLANLLLKHYEEKQAWNITFNIFQKLNRTDLIERAKREIAGHPKLYQAHLK
                     TKLTHDSSRVFTTIIQDLLKENFTQNDRAYFENLLPSNRTVMRPQVVVIKGMAGIGKT
                     LILKKLMFAWSKGLLFQNNFSYIFYFCCQDVKQLKTASLAELISREWPGSSAPIEEIL
                     SEPEKLLFLIDSLEGMEWDLSECESKLCANCIEMQPVNVVLSSLLMRKILPESSLIIS
                     TTPETFEKMENRIKYTSVRTVTGLNESDIISCFYNLFQDMNRALEVFSLVRKNEQLFN
                     ICQAPIVCCMIAKCLKNEIEKGKDPISLCRHITSLYTTYIFNLFIPQNAQYPSKKSQD
                     QMQGLCFLAAEGMWTNTFVFSEESLRRNGVMDSDIPTLLDIGMLVKIRESESSYIFLH
                     PSVQEVCAAIFYFLKSHEDHPSQYVKCIDILIFMFLKKIKTEWIFLGCFIFGLLHELE
                     QKKLDAFFGHQLSQEIKHQFYQCLETIRGNEELQEQIDGMKLFYCLFEMEDEAFLIQA
                     MNCIEQINFVAKDYSDIIVAAYCLKHCSTLKKVSFSTQNILNEEQEYSSMEKLLTYWN
                     QMCSIFISNKDIQELQIKQTCLSDPAFSVFYNHWKHRTCTIKILKANMVSFLCEKHLF
                     FEFIQNHNLQYLDFSFTCLSHINVELLCDVLNQAECNVEKLVVEHCNLSPDDCQNFAF
                     VLMNSKTLKILNLACNNLDKGIYSLCKALCHPNCILENLVLDNCSLSEQCWDYLSDAL
                     RQNKILCHLDISNNELKDKGLKILCKALTLPNCVLKSLCMTHCLITSSGCQDLAEVLR
                     NNQNLKGLQISNNKLEDAGVKLLCDAIKHPNCQLMDLGLEACEITGASSEDLSSAFLQ
                     SNTLGRVNLCGNAFEISGLALFPRF"
ORIGIN      
        1 atggcatctt tcttttctga ttttggcatt atgtggtact tgaaagagct aaacaagagg
       61 gaatttgtga agtttaagga gttcctcaaa caggagattt tgcaatttgg gctgacaatt
      121 tcttgtacag aagtgaagag ggcaactcgg gaaggccttg ccaacttact gttaaaacat
      181 tatgaagaga aacaagcctg gaatataacc ttcaacattt ttcagaagct caatagaacg
      241 gatctcatag agagggcaaa acgagaaatt gctggacacc caaagttata tcaagctcat
      301 ttgaagacaa agctgaccca tgacagttcc agagtattca ccactattat tcaggattta
      361 cttaaggaga atttcaccca gaatgaccgt gcttattttg agaaccttct cccatcaaat
      421 agaactgtga tgaggcctca agtcgtggtc ataaaaggta tggctggaat tggcaagaca
      481 ctaattttga aaaagttaat gtttgcctgg tcgaaaggcc tgttgtttca aaacaatttc
      541 tcctacatct tctacttctg ctgtcaagat gtgaagcagt tgaaaacagc tagtctggct
      601 gaattgatct ccagagagtg gcctggttcc tcagctccca tagaggagat tctatccgaa
      661 cctgagaaac tcttatttct cattgacagt ttagaaggta tggaatggga tctgtccgaa
      721 tgtgaatcaa agctgtgtgc taattgcata gagatgcagc ccgtgaatgt agtgctgagc
      781 agtttgctca tgagaaagat acttcctgaa tcatctctca ttatctcaac tactccagag
      841 acatttgaga aaatggagaa caggattaag tatacaagtg taagaacagt aacaggattg
      901 aatgagagcg atattatatc atgtttctac aacttgttcc aagatatgaa cagagccctg
      961 gaagtcttca gtttggtgag aaaaaatgag cagctgttca atatatgtca ggccccaata
     1021 gtctgctgca tgatagctaa atgtcttaaa aatgagatag agaagggaaa agacccaata
     1081 tctctctgcc gacatatcac ctccctatat actacatata tcttcaatct gttcattccc
     1141 caaaatgccc aatatccaag taagaaaagc caagaccaga tgcaggggtt gtgttttctt
     1201 gctgcagagg gcatgtggac taacacattt gtatttagtg aggagtctct cagacggaat
     1261 ggggtcatgg actctgacat ccccacactg ctggacattg gaatgcttgt aaagatcagg
     1321 gaatctgaaa gttcttacat attcctccac ccatctgtcc aagaagtctg tgctgcaatc
     1381 ttttattttc taaagagcca tgaagaccac cctagtcaat atgtgaaatg tatagatata
     1441 ctcatcttta tgtttctaaa gaaaatcaaa acagagtgga tctttttagg ctgtttcatc
     1501 ttcggccttt tacatgaatt ggaacagaaa aaactagatg cattctttgg ccaccagttg
     1561 tcccaggaaa taaaacatca gttctatcag tgcttggaaa ccataagagg caatgaagag
     1621 cttcaagaac agatagatgg catgaagttg ttttactgtc tgtttgagat ggaggatgaa
     1681 gccttcttaa tacaagcaat gaactgtatt gaacagatta actttgtggc taaagattat
     1741 tctgatatta ttgttgctgc ctactgctta aaacactgtt ctaccctgaa gaaagtatcc
     1801 ttttcaaccc aaaatattct gaatgaagaa caggaataca gctctatgga aaagcttctc
     1861 acctactgga atcaaatgtg ttccatattc ataagcaata aggacatcca ggaactccaa
     1921 attaaacaaa cttgtctcag tgatccagcc ttttctgtct tttataatca ttggaagcac
     1981 cgcacctgca ccattaaaat acttaaggca aatatggtgt cctttttatg tgaaaagcac
     2041 ctattctttg agtttattca gaaccacaat ttgcaatatt tggacttcag cttcacttgc
     2101 ctctcccaca ttaatgtgga attgttgtgt gatgtcttga accaggcaga atgcaatgta
     2161 gaaaaactgg tggtagaaca ctgtaacctt tcacctgatg actgccagaa ctttgccttc
     2221 gtcctgatga acagcaagac cttgaaaatt cttaacttgg catgcaacaa cttggacaaa
     2281 gggatatact cactctgtaa ggctttgtgc catccgaact gtattctgga gaacttagtg
     2341 ttggacaact gttccctcag tgagcaatgt tgggactacc tttctgatgc tcttcggcag
     2401 aacaaaattc tgtgccatct agatatcagc aataatgaac tgaaggataa aggactgaag
     2461 attctctgta aggctctgac tctcccaaac tgtgttctga agtcactatg tatgacccat
     2521 tgtctcatca cctctagtgg ctgccaggac ctggctgaag tcttaaggaa taaccagaac
     2581 ctgaagggcc tacaaatttc aaataataag ctagaagatg ctggtgtgaa gctgctgtgt
     2641 gatgctataa aacatcccaa ctgccaatta atggaccttg ggttggaagc ctgtgagata
     2701 actggtgcca gtagtgagga cctttcttct gcttttctcc agtctaatac cctgggtagg
     2761 gtcaacctgt gtgggaatgc ctttgaaatt agtggattgg ctctctttcc acggttctga
//
