LOCUS       NM_001402471            3148 bp    mRNA    linear   ROD 26-DEC-2024
DEFINITION  Rattus norvegicus sulfotransferase family 1C member 2A like 1
            (Sult1c2al1), transcript variant 1, mRNA.
ACCESSION   NM_001402471 XM_039084411
VERSION     NM_001402471.1
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3148)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000009.1.
            
            On Mar 14, 2022 this sequence version replaced XM_039084411.1.
            
            ##Evidence-Data-START##
            CDS exon combination :: SRR26643286.27700.1 [ECO:0000331]
            RNAseq introns       :: mixed sample support SAMEA5760389,
                                    SAMEA5760393 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            inferred exon combination :: based on alignments, homology
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-160               JAXUCZ010000009.1  7529184-7529343     c
            161-338             JAXUCZ010000009.1  7505388-7505565     c
            339-464             JAXUCZ010000009.1  7504910-7505035     c
            465-562             JAXUCZ010000009.1  7496875-7496972     c
            563-689             JAXUCZ010000009.1  7493110-7493236     c
            690-784             JAXUCZ010000009.1  7492584-7492678     c
            785-965             JAXUCZ010000009.1  7492269-7492449     c
            966-3148            JAXUCZ010000009.1  7488482-7490664     c
FEATURES             Location/Qualifiers
     source          1..3148
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="9"
                     /map="9q11"
     gene            1..3148
                     /gene="Sult1c2al1"
                     /gene_synonym="RGD1559960"
                     /note="sulfotransferase family 1C member 2A like 1"
                     /db_xref="GeneID:501084"
                     /db_xref="RGD:1559960"
     exon            1..160
                     /gene="Sult1c2al1"
                     /gene_synonym="RGD1559960"
                     /inference="alignment:Splign:2.1.0"
     exon            161..338
                     /gene="Sult1c2al1"
                     /gene_synonym="RGD1559960"
                     /inference="alignment:Splign:2.1.0"
     CDS             188..1078
                     /gene="Sult1c2al1"
                     /gene_synonym="RGD1559960"
                     /note="isoform 1 is encoded by transcript variant 1;
                     sulfotransferase 1C2A-like"
                     /codon_start=1
                     /product="similar to Sulfotransferase K1 (rSULT1C2)
                     isoform 1"
                     /protein_id="NP_001389400.1"
                     /db_xref="GeneID:501084"
                     /db_xref="RGD:1559960"
                     /translation="MALAPELNKQTKLKEVAGIPLQAPTVDNCRQIQMFNTKPDDFFI
                     CTYPKSGTKWIQEIVDMIDQNGDIKKCQRAINQHRPPYIEWARPPQPSGVDKANAMPA
                     PRILRTHLPTQLLPPSFWTNNCKYLYVARNAKDCMVSYYHFYRMSQVLPNPGTWNEYF
                     ETFINGKVSWGSWFDHVKGWWEIRDRYQILFLFYEDMKRDPKREIQKVMQFMGKNLDE
                     ETVDKIVLETSFEKMKDNPLTNFSTIPKTIMDQSISPFMRKGIVGDWKNHFTVAQNER
                     FDDIYKQKMDRTSLNFCMEL"
     exon            339..464
                     /gene="Sult1c2al1"
                     /gene_synonym="RGD1559960"
                     /inference="alignment:Splign:2.1.0"
     exon            465..562
                     /gene="Sult1c2al1"
                     /gene_synonym="RGD1559960"
                     /inference="alignment:Splign:2.1.0"
     exon            563..689
                     /gene="Sult1c2al1"
                     /gene_synonym="RGD1559960"
                     /inference="alignment:Splign:2.1.0"
     exon            690..784
                     /gene="Sult1c2al1"
                     /gene_synonym="RGD1559960"
                     /inference="alignment:Splign:2.1.0"
     exon            785..965
                     /gene="Sult1c2al1"
                     /gene_synonym="RGD1559960"
                     /inference="alignment:Splign:2.1.0"
     exon            966..3148
                     /gene="Sult1c2al1"
                     /gene_synonym="RGD1559960"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gtcagagtgg gtggattcct gtgctgccag ttaaccttgg atcagggaat tcactagtct
       61 gaaggaggac cttcggaaga gactgtcaga aaagtaagac gtgcatctgt tctggttaac
      121 atccatacag acacacactg cttgtgctta aacactaact caactggacc ctccaccctt
      181 agacatcatg gccctggccc cagaattgaa caaacaaaca aaactgaaag aggtagcagg
      241 gatcccactg caggctccaa ctgtcgacaa ctgtagacaa attcagatgt tcaataccaa
      301 gccagatgac ttctttattt gtacttaccc taaatcaggg acaaaatgga ttcaagaaat
      361 agtagacatg attgatcaga atggggatat aaagaagtgc caacgagcca tcaatcaaca
      421 ccgcccccct tatattgagt gggcacggcc accccagcca tcaggtgtgg acaaagccaa
      481 tgcgatgcca gctccaagga tattaaggac ccatcttccc actcagctgc tgccaccatc
      541 tttctggaca aacaactgta agtaccttta tgtggctcga aacgccaaag actgcatggt
      601 ttcctactac cacttctaca gaatgagcca ggtgctcccc aatccaggca cctggaatga
      661 gtattttgaa accttcatca atggaaaagt aagttgggga tcttggtttg accatgtgaa
      721 aggatggtgg gaaattcgag acagatacca gattctcttt ctcttttatg aagacatgaa
      781 gagggaccca aagcgtgaaa tccagaaggt aatgcagttc atgggcaaga atttggatga
      841 agagaccgtg gataaaatag tcctggagac atcgtttgag aaaatgaaag acaatccttt
      901 gacaaatttt tctacaatcc ccaagactat catggaccag tccatttccc ctttcatgag
      961 aaaaggaatt gtgggtgatt ggaaaaacca ctttactgtg gcccagaatg agaggtttga
     1021 tgatatctat aagcaaaaga tggacagaac ctctctaaac ttctgcatgg aactctgatc
     1081 aagatgagaa gatagacatc aaggacagga gtctgtctgc aagcctcaat ccagccaaag
     1141 gaagatcgga aagcaaactg taaatgccaa ggactgtgac accgactctg ttattactga
     1201 catcacatta caattcacaa aatcagatta tgtccagtgt atactttctc cactattcag
     1261 tacaaatcag taagacagct taataagcta ataaataaac aaacttgaat agtataaatt
     1321 ttatgatgac atccttctag gagttatagc ctatattcta actctaaata actatcttat
     1381 gtacaaaaac acaaatatta gaaatcatct aaatgaatgt acagaaattc ctaatttctt
     1441 tctgctcaat cggtgttttt cctggttaca gtgggaagac tcagtttgtg gacaacttgt
     1501 tgcaacatgc tcactggaac attttctacc tggtaggagg aaattgaggg aaggacttca
     1561 aggagatgtc agaaatccaa atcttaataa acggaatcct agttctgagt cataaaagaa
     1621 acagaagaaa ggcatgaggg tgacctttgg aaagcacaaa ttgtgtcttg ataaaaaaag
     1681 aatggaagct tggtgttcaa cttgctgcca attgcatttt gatctcctgt catctcttct
     1741 gaggaacagc ttgtactttt gcccacttta gcagagtcca tctgcatttg cttgccagca
     1801 tacttccttc cacctcccac tcgctccatg tcttgggcat ccttttactc ccagtaacca
     1861 ggcaatatgg agaacacagc atgttgcatg actgaatgat ggctcagaag acagaaaggc
     1921 acacatgttt aggtcacaaa ttctcagcac ttaccctttc actttagttg cagacgtcag
     1981 cattgctaag ctgagatcag caggagcagc ctgtggcatg agcaggatat atatgtgagc
     2041 tcagggtacc tagcatgagc tagaatgaca tttgctttct atcactcaaa tgtacacttt
     2101 ctcctaaatg ttgaggacgt gggcacagca tgtgttacta ccagcaagag ctatgagaag
     2161 gtgtagtaca agttagtgga tggaagctaa gaaactggaa catggcctag aagagaatga
     2221 gtgctcctgg ccctgggtct tcctttccct tgtttcttgg ccatgaaaaa ttcaataaaa
     2281 tgaggtggat agttttgctt tgccatttac cctcaccatg atattctgtc cagctctcca
     2341 cagaatgtaa attccaaacc caagagctaa aataaagctt ctgtctttat aagttgcttt
     2401 tcccagatac ttgttatact gaaagaaagc tcactaatac attcccaatg atgtggttat
     2461 aaaatactag aaaagtctga aattttgttg aacttataga caatcgcttg gttactgccg
     2521 aaatctaacc atatgtgtat agttaattaa caatgtctat tatataaaaa aaattatatc
     2581 cgaattgtat tgtaaaattt tattgtttgc ttctaagtct tgaaattatt caaagtttct
     2641 ctaggtagag agtcccctct tacaattcaa actaaactga agtccctaca tctgcttcct
     2701 gtcagggtta agttcataag agcccagagt cactctagcc tataaaagga gtgactctgg
     2761 tctccaacca tctactggtt aactgtagat ttaaagtaaa ctttggaaac ataatagtgt
     2821 cgaacttaag cctcttttgg ctttattctt ctgggagttt cctttgtatt cagaaattaa
     2881 aatagcagaa cttgaaagag ataaattgta aaacatatta ttctggcttt gtaagtacac
     2941 gactgtattc ataatttaca cattggcaat ttttaactat tacttttaga gacaagaatt
     3001 aatcaagtca atgaaacatt acatcagaag agtagttaag taactgttag aacgtttata
     3061 aacattttag ctttactagc attgacttat gattatttta ctagcatgtc tctatataca
     3121 caaaattcaa taaaagagtt tcaattac
//
