LOCUS       XM_008759956            3055 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus similar to synaptonemal complex
            protein 3 (RGD1559891), mRNA.
ACCESSION   XM_008759956
VERSION     XM_008759956.3
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Jan 21, 2021 this sequence version replaced XM_008759956.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3055
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3055
                     /gene="RGD1559891"
                     /note="similar to synaptonemal complex protein 3; Derived
                     by automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 2 Proteins, and 97% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:309028"
                     /db_xref="RGD:1559891"
     CDS             257..1087
                     /gene="RGD1559891"
                     /codon_start=1
                     /product="uncharacterized protein RGD1559891"
                     /protein_id="XP_008758178.1"
                     /db_xref="GeneID:309028"
                     /db_xref="RGD:1559891"
                     /translation="MYEKNSAQGTTGCLRRERPERECGRSCSLGVRAQTFAQEDMPYK
                     GKKATSKTAKRPRESSDSQSDDDVVHHNFPPRPAEKHVIEISDEDSSSSDQDDQQARG
                     SALKMTRELHGDPKKSHLAKRKQYCQDVKTSIDTLNEKLVRIFKTQQRERKMLRSKYS
                     MMFEPLFQQWEKDVMKVGQEDDSFVNSSNQRAGTMYNAMMAQRATIDEAKTVSDQFLK
                     NVQVLEDEHKVLDAIEQNKLENEMQSLKKKLETENQQQDLAAIESCLHFLFSEDNEED
                     "
ORIGIN      
        1 gaattcaggc ttgtgaagga accctgaggg aagctgcaag aggaattaat attacaaatg
       61 gaaaagagct tgaaaagcat tgtacaagta gatatttgga tgagcttaat aaagagattc
      121 tgcaaattga ggcaagttaa aaacattaac actaccctac ctgttcagca tctttctgtt
      181 cttaggctga tgctgaactg catgtctacg cccagatgac ttatgattta gaagctttcc
      241 tgagagttaa aagttaatgt atgaaaagaa ttccgcacaa ggcaccacag gctgcctgag
      301 gagagagagg ccggaaaggg aatgtggtag gagctgttca ctaggggtta gggctcaaac
      361 cttcgcacaa gaagacatgc catacaaggg gaagaaggct acaagcaaaa ctgcgaagcg
      421 cccgagggag tcttcggatt ctcaatctga tgatgatgtt gtccatcaca attttccccc
      481 cagaccagca gaaaagcatg tgattgagat cagtgatgag gacagttctt catcagacca
      541 agacgatcag caggcaaggg ggtctgctct gaagatgaca cgagaacttc acggtgaccc
      601 taaaaagtct caccttgcaa agagaaaaca gtattgccaa gatgtaaaaa cttctatcga
      661 caccctgaat gaaaagcttg tgcgtatttt taaaacacaa caaagggaaa ggaagatgct
      721 tcgttccaaa tattctatga tgtttgagcc tttgttccaa caatgggaaa aggatgtgat
      781 gaaagtcgga caagaagacg acagttttgt taattcatcc aaccaacgtg cagggactat
      841 gtacaatgct atgatggcgc agagagcgac cattgatgaa gcaaaaactg tatctgatca
      901 gtttctaaag aatgtccaag ttcttgagga tgagcacaaa gttcttgatg ctattgagca
      961 aaacaaattg gaaaatgaaa tgcaaagcct gaagaagaaa cttgagacag aaaatcaaca
     1021 acaggacttg gcagctatcg aatcatgtct tcattttttg ttctccgagg ataatgaaga
     1081 agattagcgg tgatcatgtc atgtgacatg cacaaaacat gccttacact accaaaaatt
     1141 ataatataaa ttggcccatc atctcatttg tcattctttc gtttggtata cgcgagactc
     1201 catgtccctt aaccattaag tgagctctga gcggtttggt gaattgcaga cattacaagg
     1261 tggtaaatat tgaattatca ggcccctggt cagaatcaga gaagctgaca gtaacactct
     1321 tagatagatt tggtagcaca cagtagaatt aactcagtgg tcctataaag cttctctact
     1381 gcaacttaca tttgtcctac agaaaataaa atccaactgc taaaactgat gacaaagaga
     1441 aaaaccaaaa gttcccatga aggtcttagg gcagacatag acatagggga gcaggtttgt
     1501 ggcatttcca gatagctaat gttcctgtaa ttagtttgcg tagctgttaa atgacacttg
     1561 aaattgttta acaatctact tgagatattt caattaattt atttctttga atgaggaaat
     1621 tatcgaatta tttgaaaagg tatattagtc ccagaggaag gagagggtag actcctcttt
     1681 ccatgtgctt tccactttga ttgtgacctg tgaagcatag tttatgccta tttttacaat
     1741 aggtgcatat gccttaatca tacaaattca cgagacttat tctgtcttac ccatatgtgc
     1801 acacatctgc aatgacaagg accaccttgt aaagattcta tctagccagt tttcccttgc
     1861 attttgccca attgattata gccccctcaa atgactgttc tatattcagg tccttctaaa
     1921 attgtttcca tgtatgtgaa agaacatgtg tgatgagtgt ctggcttctt tgccttaatg
     1981 taatgctctg agattgcata cagttttttt taaagggcag cattccattc ttttaggata
     2041 tctgaatggt actttatgaa tatatatacc tcatactttt cttatgctcc cagttattga
     2101 tggacaaata aggcatttgt gctttaaatt ccctgtgtac ctgaatggcc atgtgtcgtg
     2161 atggattact attgtcagca ggactggact gagaattggt tagggagtta gtaatgtaca
     2221 cctgtggcat atatgtgaag gtatttacgt ggaagatggc gagaggtacc ggagaatgcc
     2281 ttgccctgaa tgtgggtcag agcatcgtaa gaggctggga gcctgagtgg aattaaagaa
     2341 gaaatagaca aagaaactgt atgtgaaagc ttcattattt cctggactgg tgcatctgtt
     2401 gctgaggtca tcgctggtgg atatcagatt ccagtttctc caaactgtca gttcagacac
     2461 acactaatgt agcccaagag agaaccagat gttgagagtc aggctgtgta tacatcatat
     2521 atctgacttt ctttttgaaa aatcattttt atatgggagt gtatgaaaat gtacaatgat
     2581 gcacttgcga aggttagagg acacctagtg gggttggttc tcttcttcca cagtgtaagt
     2641 tctgaggatt taacattttg tgcagagtgt gttttattta ataaataggc tatgcctgat
     2701 tgattatcta tgtacacatg atggattaaa tctgcatatt attagaatga gttttagata
     2761 acagcagaca ttaatcgatc tcctcacagg ccaatagttt taaagaaaat gatgttagaa
     2821 ttggagaagc aaacctcaac cttcattttc cctaaaacat tggtagaatt catattatgt
     2881 atatatgcct catatctatt actaagatgt gtggacatcc tgggtgtata tggtatacta
     2941 aaacatactc agaaccagag agaagcattt taattaattt taagggcctg gtcattatta
     3001 ggtgccaggg aggcagagga tggaagtgtt tctcagtagg catttcaagc agcat
//
