LOCUS       NM_001394798            4740 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus CMT1A duplicated region transcript 15 like 2
            (Cdrt15l2), transcript variant 1, mRNA.
ACCESSION   NM_001394798 XM_006252727
VERSION     NM_001394798.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 4740)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000016.1.
            
            On May 6, 2021 this sequence version replaced XM_006252727.4.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360181.1711218.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on expression, longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-3711              JAXUCZ010000016.1  11234489-11238199   c
            3712-3908           JAXUCZ010000016.1  11234167-11234363   c
            3909-4740           JAXUCZ010000016.1  11232244-11233075   c
FEATURES             Location/Qualifiers
     source          1..4740
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="16"
                     /map="16p14"
     gene            1..4740
                     /gene="Cdrt15l2"
                     /gene_synonym="RGD1559804"
                     /note="CMT1A duplicated region transcript 15 like 2"
                     /db_xref="GeneID:498591"
                     /db_xref="RGD:1559804"
     exon            1..3711
                     /gene="Cdrt15l2"
                     /gene_synonym="RGD1559804"
                     /inference="alignment:Splign:2.1.0"
     CDS             3535..4170
                     /gene="Cdrt15l2"
                     /gene_synonym="RGD1559804"
                     /note="ral guanine nucleotide dissociation
                     stimulator-like"
                     /codon_start=1
                     /product="uncharacterized protein LOC498591"
                     /protein_id="NP_001381727.1"
                     /db_xref="GeneID:498591"
                     /db_xref="RGD:1559804"
                     /translation="MFSCCLRTTRGSGLKKDNREGHGGVWRHRVRSCLRRLWPFSRKV
                     RSSTKTSQSHEHTDKSENDSAAQDLSESYRDSSISTEAVVKLGNKLGPSLQEGDTFYV
                     PAFSIIYQRFDTPLLVLDQLFLRYANFSPYCEEDEQINNALCSFLETWMDKNTEDYCE
                     PSELFILKYIKAYFDVCMAHLDLSVQVNRFMTLLQDNQAKDSHPRMSKAQI"
     exon            3712..3908
                     /gene="Cdrt15l2"
                     /gene_synonym="RGD1559804"
                     /inference="alignment:Splign:2.1.0"
     exon            3909..4740
                     /gene="Cdrt15l2"
                     /gene_synonym="RGD1559804"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cgagcaattt gcaaaattat ttgggaagga aaaaagaact taggatttca acaagtattc
       61 taaacaataa aagaattctg gggaattcac ccttcctgac ctaaaggtgt attaaaaaaa
      121 aggtcttgaa aaaaacttca taatactggt acagagacag gcaggttgat caatagaata
      181 gaactgaaga cctagaaatg gacgcataca ccattggtca cttgatctta cacaaaggac
      241 ctaaaattat gcaattgaag aaagacagca ttttcaacat atggcgctgg ttcaagtgga
      301 ggtctgcaag gtaaagaatg caaattgacc cattcttatc tccttgtaca gaactctagt
      361 caagtggatc aaagatttcc acataaaatg agacacactg aaactaatag aaggaaggtg
      421 ggaaaatgcc ttcaacacat aaacacaggg aaaacctact gaacagagca taaaatgtga
      481 tgcagtacat acaggagtac tacacagcta ttaaaaacaa tgattacatg aaattattag
      541 gcaaatggat ggaacttgag aataccaacc taagagaagt aacccagtca caaaggaaca
      601 cacatggcac atggactaca ctagctgcaa agtggatagt aggccaacag cttggaataa
      661 ctaagaaaaa attaacagat cataacaagc tcaagaagaa ggaagacgaa catgtgaatg
      721 cttcattcct tcttaaaagg gagaacataa tactcagggc aggaaataca gaaacaaaga
      781 gtgaagatgg actgaagaga aggtcttcca gagaccaggt ccctcgcctg gggacatatc
      841 tcatgtgcag cctacaaact caggcactat tgctgattcc aagaagtgct agctgaagga
      901 gccaggtatg gctgactcct aagaggctct gctggaaccc aactgacaca catgaggatg
      961 gttgcaacta acaattggac tgaacaaggg gaacgcaatg gaggagtaag aaaaaagact
     1021 gaaggagcag aaggatttgt aaccctgtaa gaagaacaat actatcaagc aaacccatcc
     1081 caccagacct cccagggacc aaaccaccaa ccaatcagta cacctggagg gtcccaggac
     1141 tgcagccaca catgtagcag aggatgccat tgtccagaat cataaagact aaaagccctt
     1201 ggtcctgtga agactctgtt ccccaaagta ggataatgcc agggtgttga gggtggagtg
     1261 ggtgggtggg agtgggagca tcctcagaga agagggggtt gggaagagga tatgggtaag
     1321 ggggtaaagc agataacatt tgaaatcaaa aacaaaaata tccatgaaaa acacgattta
     1381 aaaaaatagc caaaaatcaa gtgttgatca ggaattgaag tagttcacac tcaaaatcag
     1441 caggaagaag gggatgttga gcagctactg acagagaaaa gctctaccag tcattgatgt
     1501 taaactacca agtgttacgc aggaaaatac aatgaagaag aagtcagcca tcttggaagt
     1561 ccacaatttt gctgactcta cactgctcta caatactctc tgacttacag tcaatgtttt
     1621 aattcctaat ctcactggat cagtggtaat aactactctt cctcagcttt tctatcacag
     1681 ttctattatt aattctagtg tggtggtgca tctacatgat tcatatcaat actatggcag
     1741 cgaagggagt tgtgtggcta actttcatga catgatcaga ctcctagacg cttggaacat
     1801 aattctcatg tcacataatc cttctctata caggcttttc atctcttgat aattttcaac
     1861 ttatcaagtg gaagtggtat cttcacagac gaatcctctg aacttagatg tccctgctcc
     1921 cattaccaat agattccaca gctcgtctgc ttctaggaac agagccatga agagtcttag
     1981 agttcctcta ttgtgtttta ttttgtctca ccagaggaca cagatcaaga ccatgatgtg
     2041 gacctaggtt cctttgaaga gagagttagt tcccagggtt atttctgtac caagtcattt
     2101 taaggaattc taactttttc cttaacccat aaagaatgtt acattctacc aaaactcaca
     2161 tacacaacac acacacacac acacacacac acacacacac acacacactc cccccaaaaa
     2221 ggaaaaaaca catggacaca catccataga tgcaaatgtt tgcttgaatg tatgcatgta
     2281 agcactccca tgtactttct cagatgaaca tgcacagata aacctaacac atataacaaa
     2341 gctatcatgc aatgccctcc acacatgtac cttgaggcat aaccatgcac atgaatatga
     2401 acatccagga gatcctgaac aatttttggg aatttaaaca aaagaatcta aataacgtca
     2461 gagggaagag tacaggagca atgaactcaa ctctactcca tttggcaagg gagacaacat
     2521 agtaattaac tgtaacaccg cccaccactg tggagtagca gggaattctg atctcatgga
     2581 cttggtgttt acccctcaca tcactggctt gttaaactgt gacccagaca ctgtgttgga
     2641 aggagggaga tgaccagggg ataaagagtg aatgacttcg gagcaaatgt tactgagagg
     2701 agcagaaaaa ggaaacagag tataacggaa gagatgggat agaggaggaa gaatgattag
     2761 gaactagaga agtgatggct gccacatgac acatgatggg cacagagaaa gtgtggtgtg
     2821 ttctgttcag gtttcattca gttactttga caagcaccag cactaaatga tactaaggaa
     2881 agagaaagtt ttcttgcaga tgacaggaca cagccgacca ttgaagggaa tcagatcaag
     2941 gacacaagca ggaattaaaa gaagaagcaa tggaggatga atccactctg aaagagtgct
     3001 agggggccag cgtccatctt gtaagtggtt ggatgatcct aggtcagagg atcacaaagg
     3061 gctgtaaagc tactggctta agccctaaaa tgatcatcat ggtagaaacc gactctgtga
     3121 aagacaattc ctaggcaggc acactgacat tgtggagctg ctgcggtcac aggcgtgcat
     3181 gtgatctcat tccacacaga acacatacaa ggtcatgtaa atgcaaggag accagcctag
     3241 ggtttgttta tggtaaattg ggataattag ggctgaattt atgagtatgg ttacagatgt
     3301 agctcaaaag gagagactca gcttccaaaa ctgatatcta cctatgttga tttgtgtacc
     3361 taggaaatgg cagggggcat gggagccttt aaggaatgtt ctgttgaaga agggacagtg
     3421 atggaaccac cctcttcaaa atgacctaac aatacagaac cttggtaacc aggcaacaca
     3481 ctggttggag caaggcctgc aggctcactt gccagagaca gttgagaggg aaggatgttc
     3541 tcttgctgtc ttcggactac tcgaggctca ggcctcaaga aagacaacag ggaaggccac
     3601 ggtggtgtct ggaggcacag ggttcgctct tgtcttcgac gcctgtggcc attttcccga
     3661 aaggtaagat catcgaccaa gaccagtcaa agccatgagc acacagacaa gagtgagaat
     3721 gattctgcag cacaggacct gagcgagtcc tatagagact ccagcattag tacagaggct
     3781 gtggttaagc tagggaacaa gctggggcct tctctgcagg aaggggacac cttctatgtc
     3841 cctgcctttt cgatcatata ccaaagattt gacacccccc tactggtact ggaccagctg
     3901 ttcctgaggt atgctaactt cagcccttat tgtgaagagg atgaacaaat aaataacgcc
     3961 ctctgtagct tcctggaaac atggatggac aagaacactg aggactattg tgaaccctcg
     4021 gaactgttca tactgaaata tataaaggcc tattttgatg tgtgtatggc acacttagat
     4081 cttagtgtcc aggtcaatag gttcatgact ctcttgcagg acaatcaggc caaggattcc
     4141 catccaagga tgagcaaggc tcagatctga ggagacacac atcctcagat ccacagattg
     4201 catgggtgta aaacagcagg acaagagcca ctctggagcc agaaccaact tgtgcatcac
     4261 agctggaggg cacaaaacct ccagaacttt ctctgaagca tgattagttg caaccagatg
     4321 tggcagcagc agcacagaca gcacacatga tagcagctgt tgaacttgtg tctcagtatg
     4381 tctgtagata caatgtatgt ttcactaact tcctacttgc tgcagtgggc ctacctattc
     4441 agagaatggc cctgtaacac cttgtgtgtg cctgccctgt atctgtgcta ctgctcctgc
     4501 ccagggtgct cagcccctca cttcagtcca gcagcaattc cagccccaca cccagccttc
     4561 ttcctcccct gagatatcac ctttttattc tttctgatct tttccatttt gtgtttaaat
     4621 attggtttaa taaattgtta ttgtttgttt tcactttgct caaagttgtc tatggtacaa
     4681 aaataattta aaaaagttaa acataagcat ttaaaattat taaatgtcat gcttaaatta
//
