LOCUS       XM_039089981            1202 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus similar to cell surface receptor
            FDFACT (RGD1559588), transcript variant X1, mRNA.
ACCESSION   XM_039089981
VERSION     XM_039089981.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051347.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1202
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="12"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1202
                     /gene="RGD1559588"
                     /note="similar to cell surface receptor FDFACT; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 100% coverage of the annotated genomic feature by
                     RNAseq alignments, including 16 samples with support for
                     all annotated introns"
                     /db_xref="GeneID:304349"
                     /db_xref="RGD:1559588"
     CDS             173..1129
                     /gene="RGD1559588"
                     /codon_start=1
                     /product="paired immunoglobulin-like type 2 receptor beta
                     isoform X1"
                     /protein_id="XP_038945909.1"
                     /db_xref="GeneID:304349"
                     /db_xref="RGD:1559588"
                     /translation="MALLVSLPEQNLAMAWILLLLLLAACLHTGNSAGYQKTQDYGVN
                     QPEQLTGIQGGSIEIPFSFYFPWELAKDPQMSIAWRWKVFFGEVIYNSTLLFLHEHFK
                     GRLIMNWTQGQTSGVLRILNLKANDQSTYFSRIFLQATEGMKLWQSRAGTKLIIHGTK
                     RIWVLCVAALFPSTFLCCSPQPHFLKSLSTTMASPSIIPSAVPTAGLENTRGQRNPSL
                     LNLGAMVGMVMAKVVVIIPLYGWVIFLWWKQRLPTARISHQVSLHHTPCIPQSSMSSL
                     WESELVAAGFSCESHSWITPTSAMGARIPSPWNQGPPVCLWA"
ORIGIN      
        1 aagaagaagc cagatcagta aaggaagttg ctggccacaa ggaggtggag atggtcctgc
       61 tcaactcagt cctccacttg agaatatctg agcatctgtt tttatttatc ctgattctct
      121 cgggactgct gagtgcccca gtgtccctag acagggcatc ctcaacttcc tgatggccct
      181 gctggtctca cttcctgaac agaatctggc tatggcttgg atcctccttc ttctgctgtt
      241 ggcagcatgt ctgcacactg ggaattcagc aggatatcaa aaaacgcagg actatggtgt
      301 caaccaacca gaacagctca ctggaatcca aggcggctcc atcgagatcc ccttctcatt
      361 ctacttcccc tgggagttgg ccaaggatcc acagatgagc atagcctgga gatggaaggt
      421 attctttggg gaagtcatct acaactccac cctgcttttc cttcatgagc attttaaggg
      481 ccggctcatc atgaattgga cacagggtca gacatcagga gtcctcagaa tcctgaactt
      541 aaaggcgaat gaccagtcca catacttcag ccgaattttt ctgcaagcca cagaaggcat
      601 gaagttgtgg cagtctagag ctggaaccaa actcatcatt catgggacca agagaatctg
      661 ggtcctgtgt gttgctgcat tgtttccttc aacttttctc tgttgctccc cacaacccca
      721 ctttttaaaa tctctcagta ctaccatggc gagcccctcc atcatcccct ctgcagtccc
      781 cacagctggc ctggagaaca caaggggcca gaggaatcca tcactgctga acttgggagc
      841 catggttggg atggtcatgg ccaaagttgt ggtcatcatc cccctctatg gatgggtgat
      901 cttcctgtgg tggaagcaaa ggctccccac tgctaggatc tctcatcagg tgagtttaca
      961 tcacacaccc tgcatcccac agtcttccat gtcttctctc tgggagtcag agctcgtggc
     1021 tgcaggattc tcctgtgaaa gtcattcttg gataaccccc acttctgcca tgggggctcg
     1081 gataccctct ccttggaacc aaggtcctcc tgtgtgtctc tgggcctgag agcctgattg
     1141 tgctgttctc tgtctgctca tggagttatt gacactttta ataaatatgt tactcccacc
     1201 aa
//
