LOCUS       XM_220362               3801 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus similar to novel protein (RGD1559575),
            mRNA.
ACCESSION   XM_220362
VERSION     XM_220362.8
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051345.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_220362.9.
            
            On Jan 21, 2021 this sequence version replaced XM_220362.7.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3801
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3801
                     /gene="RGD1559575"
                     /note="similar to novel protein; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1
                     mRNA, 2 ESTs, 15 Proteins, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     116 samples with support for all annotated introns"
                     /db_xref="GeneID:287231"
                     /db_xref="RGD:1559575"
     CDS             976..3510
                     /gene="RGD1559575"
                     /codon_start=1
                     /product="uncharacterized protein RGD1559575"
                     /protein_id="XP_220362.3"
                     /db_xref="GeneID:287231"
                     /db_xref="RGD:1559575"
                     /translation="MGQTSSSTTPPKEDPDLTSSFGTNLQNFEMKTKILSQELITFIE
                     SSLEGGNLRETVSAISDALSDIEKAPLNIAVIGETGAGKSSLINALQGVGADKEGTAA
                     PTGVVHTTSERTPYTYTKFPCVTLWDLPGIGSPAFQPHDYLKKIKFEEYDFFIIVSSG
                     RFKHNDAELAKAIVQMNRSFYFVRTHIDLDLMVVKLSAPKRFDKENILEEILNSISSI
                     LKEVTYQEPPVFLVSNFNVSDFDFRKLETTLLEELPAYKRHIFMLTLPTVTESTIDRK
                     RDMLKQKIWKESIMPRAWASIPFRGLTQNDIEMLEQTLNDYRSSFGLDEASLENIAGD
                     LNVTLEELKANIKSPHLLSYEPDISLRDKLLKYISHPYFSKVFHLQNYFIDAVASDVK
                     LILSKEELLTNKHPPGHTATCKSSSSRSSPLTAQLLSLGLKIFFKSFKKESKILSEET
                     VTLIESHLEDKNLQGALSTISHALRNIDKAPLNIAVTGETGAGKSSFINALRGVRDDE
                     ECAAPTGVVEKTKERTPYPHPKLANVTIWDLPGIGSTTFPPQNYLAEMKFGEYDFFVI
                     ISATRFKETDAHLAKAIAKMNTKFYFVRTKIDQDLRNEEKSKPKVFNRDGVLKKIRDD
                     CSQHLQKDLSSEPPIFLVSNFDVSDFDFPKLETTLLSELPAHKRHIFMLSLHNVTETA
                     IDRKRDFLKQKIWLEALKAGAWTTIPFGGLVHDKKQTLEDTLNLYRSYFGLDEASLEK
                     IANNFNVSVDEIKAHIKSLHLLTENKDMSFGEKLLKYIEYISSFTGGPLASGLYFRKT
                     YYWKSLFIDTVASDAKALLNKEAFLSEKPGLRVSDHTEYWEAGMEL"
ORIGIN      
        1 aactggtaac gtaactgcct ttcaaagaga aagttatgac ttggttaccc agaatccaca
       61 taaaagatag gcatagtaga gtgactttgt aattccggga ctgaggaagg agtgagacag
      121 atccctgaag aaggagtgag acagatccct gaagaaggag tgagacagat ccctgaagct
      181 accttgtcta attggtgaag tccaggccag taagtgtgtc tatctcaaaa taagaatgat
      241 attggggttg gggatttagc tcaatggtag agctcttgcc tagcaagcac aaggccctgg
      301 gttcggtccc cagctctgga aaaaaagaaa attaaaaaaa aaaaaagtat gtcaacagga
      361 caacaggcac gggcagggtt acagcaagct gcaatcattg aaccatgggc tcactggctc
      421 tgaaagtcag tgctgtccag caatagatga catcatctga aaagagggtc ttgaggtagg
      481 aaaacagagt ggacagtgcg ggggcgcgga gccctgacac tgggctaggc taccacagta
      541 cccaccacag cactcaggaa gctggccact tcagcagagc tccgcctcct tccctgttga
      601 agaatatgaa accttttcag ctgattgtgt aagccagtca cagagatctg ggaacagaac
      661 ctaaagccta ccctcactgc agtcccttcc ttcacggaca aggcaggtgg gattcagatc
      721 tgaggaatgc agagcaaaaa gcaaagactg tgtgaaccga gatctggaaa ggaatccgag
      781 aactccgcct ttacctcctg gctattctct ccagagcacc aagacgccaa cactctgtag
      841 catctgtttc ctgaacatcc cagcttagag gattccatag aaagctgaac cagtgacctc
      901 gctcccagag aagaggtaac atcacaggag ggccactgcc atcacatcac tgcagtacca
      961 tcgacatttc ccagcatggg tcagacttct tcttctacaa cccctccaaa ggaggatcct
     1021 gatttgacct ccagctttgg cacaaatctt cagaatttcg agatgaaaac caaaatcctg
     1081 tctcaggaat taatcacctt cattgaatca tccctagagg gtggaaacct tcgggaaaca
     1141 gtttctgcaa tcagcgatgc tctgagtgac attgagaaag ccccgctgaa catcgcagtg
     1201 ataggggaga ctggggctgg aaagtccagt ctcattaatg ctctacaggg agtgggggct
     1261 gataaagaag gtacagctgc tcccactggg gtggtccata cgacctctga aagaacacca
     1321 tacacataca caaagtttcc ctgtgtgaca ctgtgggacc tgcctggcat tgggtctcct
     1381 gccttccaac cacatgatta tctgaagaaa atcaagtttg aggagtatga cttcttcatt
     1441 attgtctctt ctggacgctt taaacataat gacgcagaac ttgccaaggc cattgtgcaa
     1501 atgaatagga gtttctattt tgttcgaact cacatagatc ttgatctaat ggttgtaaaa
     1561 ctgagtgctc ctaagagatt cgataaagag aacatcttag aggagattct aaattccatt
     1621 tcaagtatac ttaaggaagt tacctaccag gaacctccag tcttcttagt ctctaacttt
     1681 aatgtgtctg actttgactt ccgaaagctg gaaaccaccc ttctggaaga gctcccagcc
     1741 tacaaacgcc acatcttcat gctcactttg ccaactgtta cagagtccac catagaccgg
     1801 aagagggata tgctgaaaca aaagatctgg aaggaatcca taatgccaag agcatgggcg
     1861 agcataccat tcaggggatt gacccaaaat gacatagaga tgttggaaca gactttgaat
     1921 gactatagat cttcctttgg cctggatgag gcatcacttg aaaacattgc tggggatttg
     1981 aacgtgacac tggaggaact caaggcgaac attaagtctc cccatttgct ctcatatgag
     2041 ccagatatat ccttaagaga taaactattg aagtacatta gtcatcctta cttttcaaag
     2101 gttttccact tgcaaaatta tttcattgac gccgttgcaa gtgatgttaa acttatcctc
     2161 agtaaagaag agcttttgac aaataagcat cctccaggac acacagctac atgcaagtct
     2221 tcctccagca gatcctctcc tttaacggct caacttttgt cactcggctt gaaaattttt
     2281 tttaagagtt tcaagaagga aagcaaaatc ctctctgagg aaaccgtcac cttgattgaa
     2341 tcccatctgg aggataagaa ccttcagggg gcactgtcta caattagtca tgctctgaga
     2401 aacattgaca aggccccact gaacatcgct gtgactggag aaacgggggc agggaaatcc
     2461 agcttcatca atgccctgag gggagtgagg gatgatgaag aatgtgcagc ccccactggt
     2521 gtggtggaga aaaccaagga gagaactcca tacccacacc caaagctcgc caatgtgaca
     2581 atatgggacc tgcctggcat tgggtccacg accttcccac cacaaaacta tctagcagaa
     2641 atgaagtttg gtgagtacga cttctttgtt atcatctcgg ctacgcgctt caaagaaacc
     2701 gatgcacatc tggccaaagc cattgcaaag atgaacacaa agttctactt tgtccgaacc
     2761 aaaatagatc aagatctccg taatgaagag aagagtaaac ctaaagtttt caacagagac
     2821 ggtgtattaa agaaaattag agatgactgt tcacaacatc ttcagaagga tctctccagt
     2881 gagcctccca tcttcctagt ctctaacttt gatgtgtctg actttgactt cccaaagctg
     2941 gagaccaccc tcctgagtga gctcccagcc cacaagcgtc acatcttcat gctgtccttg
     3001 cacaatgtta ctgagactgc cattgaccgg aagagggatt tcctcaaaca gaagatctgg
     3061 ctagaggccc tgaaagctgg agcctggacc accattccat ttgggggctt agtgcatgat
     3121 aaaaagcaga cgttggaaga caccttgaat ctctacaggt cttactttgg cctggatgaa
     3181 gcctcgctgg aaaagattgc caataatttc aatgtgtctg tggatgaaat caaggcacac
     3241 attaagtctc tccatttgtt aacagagaac aaagacatgt ccttcggaga aaaactgttg
     3301 aaatatattg aatatatttc cagttttact gggggaccac ttgcttcagg cctttacttt
     3361 agaaagactt actattggaa aagtctcttc attgatactg tggcaagcga tgccaaggct
     3421 ctccttaata aggaagcgtt tttatcagag aagccaggat tgcgcgtgtc tgaccacact
     3481 gaatactggg aggcagggat ggaactataa ggttctaacc tttggactgg cttcaggcgc
     3541 tcacttaaag cctactttta agcagaaaac attttctggg aaagaccgga ggattcatct
     3601 cttttagaga cagactagca ccatggcgag tggaagaaga gttgttcaca gtgtaagaac
     3661 tgtcttccat taaaggaagg acccatgact ccagctgcat atatagcaga ggatagcctt
     3721 atctggcatc tgtgggaggg gaggtacttg gtcctgtgaa ggctttatac cccagcctag
     3781 ggaaatgcta gggcagtgag g
//
