LOCUS       NM_001419510            2044 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus CD99 molecule like 4 (Cd99l4), mRNA.
ACCESSION   NM_001419510 XM_017593691
VERSION     NM_001419510.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2044)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     INFERRED REFSEQ: This record is predicted by genome sequence
            analysis and is not yet supported by experimental evidence. The
            reference sequence was derived from JAXUCZ010000005.1.
            
            On Apr 4, 2023 this sequence version replaced XM_017593691.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR22582416.1695628.1,
                                           SRR26360176.2152638.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on expression
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-156               JAXUCZ010000005.1  29520077-29520232
            157-219             JAXUCZ010000005.1  29543093-29543155
            220-291             JAXUCZ010000005.1  29554614-29554685
            292-378             JAXUCZ010000005.1  29555042-29555128
            379-444             JAXUCZ010000005.1  29557020-29557085
            445-486             JAXUCZ010000005.1  29564018-29564059
            487-606             JAXUCZ010000005.1  29564700-29564819
            607-702             JAXUCZ010000005.1  29565088-29565183
            703-2044            JAXUCZ010000005.1  29566019-29567360
FEATURES             Location/Qualifiers
     source          1..2044
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /map="5q13"
     gene            1..2044
                     /gene="Cd99l4"
                     /gene_synonym="RGD1559441"
                     /note="CD99 molecule like 4"
                     /db_xref="GeneID:500410"
                     /db_xref="RGD:1559441"
     exon            1..156
                     /gene="Cd99l4"
                     /gene_synonym="RGD1559441"
                     /inference="alignment:Splign:2.1.0"
     CDS             90..782
                     /gene="Cd99l4"
                     /gene_synonym="RGD1559441"
                     /note="disks large homolog 5-like; rCG65881-like; CD99
                     antigen-like protein 2"
                     /codon_start=1
                     /product="CD99 molecule like 4 precursor"
                     /protein_id="NP_001406439.1"
                     /db_xref="GeneID:500410"
                     /db_xref="RGD:1559441"
                     /translation="MVARLTALLVCLVFSLATLVQRGYGDFDDFNLEDALKETSSVKQ
                     RWDHITTTTTRRPGTTRAPSNPMELDGFDLEDALDDRNDLDGPKKPSTGEGGGWSDKD
                     LEDILGGGGYKPDKNKGGGGGYGSHDDPGSGAVTDPGTIAGLVSTLAVALLGAVSGYL
                     SYQHRKFCFSVLRGLEEAYMKGENLEAVVCEEPRMEASMCEAPPVTDSTQHTQPAEPP
                     APEPPAPEPPRI"
     exon            157..219
                     /gene="Cd99l4"
                     /gene_synonym="RGD1559441"
                     /inference="alignment:Splign:2.1.0"
     exon            220..291
                     /gene="Cd99l4"
                     /gene_synonym="RGD1559441"
                     /inference="alignment:Splign:2.1.0"
     exon            292..378
                     /gene="Cd99l4"
                     /gene_synonym="RGD1559441"
                     /inference="alignment:Splign:2.1.0"
     exon            379..444
                     /gene="Cd99l4"
                     /gene_synonym="RGD1559441"
                     /inference="alignment:Splign:2.1.0"
     exon            445..486
                     /gene="Cd99l4"
                     /gene_synonym="RGD1559441"
                     /inference="alignment:Splign:2.1.0"
     exon            487..606
                     /gene="Cd99l4"
                     /gene_synonym="RGD1559441"
                     /inference="alignment:Splign:2.1.0"
     exon            607..702
                     /gene="Cd99l4"
                     /gene_synonym="RGD1559441"
                     /inference="alignment:Splign:2.1.0"
     exon            703..2044
                     /gene="Cd99l4"
                     /gene_synonym="RGD1559441"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 tctctggctc ctccaccccg gctccacctg cgtctctgtc cctcctggga taactgtgct
       61 cctctgggat cctgcacctg ctcccagcca tggtggccag gctcaccgct cttctcgttt
      121 gcctcgtttt ctccttggct actctggtcc agagaggata tggagacttc gatgatttca
      181 atctggagga tgcgctgaaa gaaacttcct cagtaaagca gagatgggac cacatcacca
      241 ctactacaac gagaaggcca ggaacaacta gagcaccgtc aaatcctatg gaacttgatg
      301 gttttgactt ggaagatgcc ttggatgatc ggaacgatct agatggcccc aaaaagccaa
      361 gtactggaga aggaggaggt tggtcagaca aggatctcga agacatcttg ggaggcgggg
      421 gatacaaacc tgacaagaat aaaggtggcg gtggtggtta tggcagccat gatgaccctg
      481 gatccggcgc agtgacagac cccggcacca tagcgggcct ggtcagcacc ctggccgtgg
      541 cccttctcgg agcggtgtcc ggctacctct cctaccagca ccggaagttc tgcttcagcg
      601 tcctgcgcgg cctggaggaa gcctacatga agggggagaa cctggaagcc gtggtgtgcg
      661 aggagccccg gatggaagcc tcgatgtgcg aggcgccccc agtgacggac tcgacacaac
      721 acacacagcc tgcagagccc ccggcacccg agcccccggc accggagccg ccccggatct
      781 gaggccctgg tcagtggtca gctccccgac accggaacca cccctgatct gaggccctgc
      841 tcggtggtca gcgcttggca cccgaatatc gtcggcccat cctttccctg ggttccttcc
      901 ccgcccctgg cttctcccca caccgcattt tccctgccag ccttgggtgt gcgtgagttg
      961 cgatttctgt gcccttccgt gcggaccgcg ctgaccactg tgcaaaacgg actcgggaga
     1021 gactcggtgc cgagatctgc gaccctggtt cgacaagtac tgtgtgcaca tttgtcgttt
     1081 tgcgctgacc actgagtgct gtgaggagtg cgcccagctg gcacctggtg cattcagagc
     1141 ccacttgaga caaatcagac agctgcaaca catgctcaca cacacacatg taacacacac
     1201 gcacacacac gcacacacac atgcacacac aaaacatcac acatgcacac atatgcacac
     1261 acaggcacgc gcacaggcac acacacagac acacacacac atgcttgtgt ctgcaggtgt
     1321 gtgttacatg tgcgtgcttg tgtgtgtgcg tgtgtgtgtg tgcacgccag gaccaaagct
     1381 gacaccactc ctccttgggc tgcaccgtgc attgttcttc ggcccccggg agtcctacag
     1441 tgaaccttgc aggcgggagc tcagggcatt tctatgccat gtggcccaat ggtttgccac
     1501 gtcagaaaat catttgtgag agtggagcgg cccgcttgga aggcgaggcc cacagtggac
     1561 gacgtgattg gctccgtgta tcccacaggc tgcacatcac ctctgctgag ctgcagcagg
     1621 aacctgacca atgagccatc ctgctgctat gctgtcttct ggcggctcag gaacccggcc
     1681 atggaagcca tggttgttgg tggtcatctc agctcctagg atttgttggg ccctaccttg
     1741 gggtgtttcc cttccccttc gctgagcctt ttagcctgct atagcaagtt gtttacaccc
     1801 ttggcagctg ctcttggccc ctgatttggg gcgggacttt ccatggcacc ctttctccca
     1861 ccgagccttc cagcttgttg ttaagaagtt gtttatgccc ctgattgggc ctgggactgt
     1921 ccaccataca gacttttcct gttttcctga ttggggattt tcacctgcct tgttgttttt
     1981 ccatggcttt tgcctcgggt atataaggag atctcagtaa agccttggtg gcactctctg
     2041 aaaa
//
