LOCUS       NM_001025683            2119 bp    mRNA    linear   ROD 30-MAR-2024
DEFINITION  Rattus norvegicus similar to human chromosome 11 open reading frame
            24 (C1h11orf24), mRNA.
ACCESSION   NM_001025683 XM_219679
VERSION     NM_001025683.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2119)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 2119)
  AUTHORS   Gerhard,D.S., Wagner,L., Feingold,E.A., Shenmen,C.M., Grouse,L.H.,
            Schuler,G., Klein,S.L., Old,S., Rasooly,R., Good,P., Guyer,M.,
            Peck,A.M., Derge,J.G., Lipman,D., Collins,F.S., Jang,W., Sherry,S.,
            Feolo,M., Misquitta,L., Lee,E., Rotmistrovsky,K., Greenhut,S.F.,
            Schaefer,C.F., Buetow,K., Bonner,T.I., Haussler,D., Kent,J.,
            Kiekhaus,M., Furey,T., Brent,M., Prange,C., Schreiber,K.,
            Shapiro,N., Bhat,N.K., Hopkins,R.F., Hsie,F., Driscoll,T.,
            Soares,M.B., Casavant,T.L., Scheetz,T.E., Brown-stein,M.J.,
            Usdin,T.B., Toshiyuki,S., Carninci,P., Piao,Y., Dudekula,D.B.,
            Ko,M.S., Kawakami,K., Suzuki,Y., Sugano,S., Gruber,C.E.,
            Smith,M.R., Simmons,B., Moore,T., Waterman,R., Johnson,S.L.,
            Ruan,Y., Wei,C.L., Mathavan,S., Gunaratne,P.H., Wu,J., Garcia,A.M.,
            Hulyk,S.W., Fuh,E., Yuan,Y., Sneed,A., Kowis,C., Hodgson,A.,
            Muzny,D.M., McPherson,J., Gibbs,R.A., Fahey,J., Helton,E.,
            Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M.,
            Madari,A., Young,A.C., Wetherby,K.D., Granite,S.J., Kwong,P.N.,
            Brinkley,C.P., Pearson,R.L., Bouffard,G.G., Blakesly,R.W.,
            Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J.,
            Myers,R.M., Butterfield,Y.S., Griffith,M., Griffith,O.L.,
            Krzywinski,M.I., Liao,N., Morin,R., Palmquist,D., Petrescu,A.S.,
            Skalska,U., Smailus,D.E., Stott,J.M., Schnerch,A., Schein,J.E.,
            Jones,S.J., Holt,R.A., Baross,A., Marra,M.A., Clifton,S.,
            Makowski,K.A., Bosak,S. and Malek,J.
  CONSRTM   MGC Project Team
  TITLE     The status, quality, and expansion of the NIH full-length cDNA
            project: the Mammalian Gene Collection (MGC)
  JOURNAL   Genome Res 14 (10B), 2121-2127 (2004)
   PUBMED   15489334
  REMARK    Erratum:[Genome Res. 2006 Jun;16(6):804. Morrin, Ryan [corrected to
            Morin, Ryan]]
REFERENCE   3  (bases 1 to 2119)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000001.1.
            
            On Apr 3, 2023 this sequence version replaced NM_001025683.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC098053.1, SRR26643429.4355.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-104               JAXUCZ010000001.1  210374426-210374529
            105-302             JAXUCZ010000001.1  210379330-210379527
            303-477             JAXUCZ010000001.1  210380678-210380852
            478-2119            JAXUCZ010000001.1  210381550-210383191
FEATURES             Location/Qualifiers
     source          1..2119
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q43"
     gene            1..2119
                     /gene="C1h11orf24"
                     /gene_synonym="RGD1311946"
                     /note="similar to human chromosome 11 open reading frame
                     24"
                     /db_xref="GeneID:309145"
                     /db_xref="RGD:1311946"
     exon            1..104
                     /gene="C1h11orf24"
                     /gene_synonym="RGD1311946"
                     /inference="alignment:Splign:2.1.0"
     exon            105..302
                     /gene="C1h11orf24"
                     /gene_synonym="RGD1311946"
                     /inference="alignment:Splign:2.1.0"
     exon            303..477
                     /gene="C1h11orf24"
                     /gene_synonym="RGD1311946"
                     /inference="alignment:Splign:2.1.0"
     CDS             402..1835
                     /gene="C1h11orf24"
                     /gene_synonym="RGD1311946"
                     /note="uncharacterized protein C11orf24 homolog"
                     /codon_start=1
                     /product="uncharacterized protein C11orf24 homolog
                     precursor"
                     /protein_id="NP_001020854.1"
                     /db_xref="GeneID:309145"
                     /db_xref="RGD:1311946"
                     /translation="MWTALVLVWISSVPLSRSHTVPAVPRHLVTNKWPRAGKQNLSGD
                     AVPRADNTSTLRAATVPPAPVTLTTGTWAATLNSTRVTAETTPHGTNTSTPTTREGTA
                     DSVTSRILAAPTSSSPSSVRQTLPTTIAGLPSLSTPRAEVPRTNASVSPRTAIATTVA
                     PHTGTPTTGTVTAVSTVTPASGTVTAAVGTVTPAAGTVTAAVGTVTPAAGTVTAAVGT
                     VTPAAVGTVTAAVGTVTSAAGTINTSDPHARTLSPAKSTPTNTSSRNPIPTSGAQTQG
                     TTIQVTTDQPVHSTAGRPTPSPSNTTLEPNTPKSVASTSSAVVTTTQVQTKEPSASTV
                     PVLPTSMSPEVEATSPTTQPSPLLPTQGTGGPGILLTTEQVGTKATAGTASAGPTSRS
                     SGDVKVPTTASCQLSTQGQYLVVTTDPLTPSLVNKMFLLVVLIVGVTLFIAVLMMFAL
                     QAYESYKKKDYTQVDYLINGMYADSEM"
     exon            478..2119
                     /gene="C1h11orf24"
                     /gene_synonym="RGD1311946"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gagatcagct aactgggttt cgctgcggtc cacgtccccg cgcggggctg aatcgctgaa
       61 gtggctgcgc tgcggtgaga gggccacggg cctgccgcgc ccgggtgtgt ctgacaccac
      121 agaggagcgt ctgcctctgt cctacatgtg cctcggcaaa tgccatggcc tgggagtgcc
      181 caacccagca gctctcacct gcaaagccag acttcatatg gcaagtacag gatgccaagt
      241 ccacagctgc ccaaggagga cgtcagcctg gcctcctagt ctgcactgag cagctgcctc
      301 tgatccctgg gccaagcaga aggcaattgc tgacagccta aagggctagc tggccgagac
      361 gctcagagac cagcagccct gcttccagct cacccagcaa gatgtggaca gccctggtgc
      421 tggtgtggat ttcctctgtg cccttatcta gaagccatac ggtgccagct gtgccacgac
      481 acttagtcac taataagtgg ccaagagcag gaaagcaaaa cctgtctggg gacgcagttc
      541 cgagggccga taatacatct accttgagag cagccacagt gccacctgct cctgtcacac
      601 tgacaacagg gacctgggca gccaccctga actccaccag ggtgacagca gagacgacac
      661 cacacgggac aaacacaagc actccaacaa ccagagaggg gacagcagac agcgtgacct
      721 ctagaattct ggctgcacct acatcttcaa gcccctcgtc tgtgaggcag actctgccca
      781 ccaccattgc tgggcttccc tctctcagca caccacgtgc agaagtgcca agaacaaatg
      841 ccagcgtatc accaagaaca gccatagcaa caaccgtggc cccacacacg gggactccta
      901 ctacgggcac agtgactgct gtgagcacag tgactcctgc ctcgggcaca gtgactgctg
      961 ctgtgggcac agtgactcct gccgcgggca cagtgactgc tgctgtgggc acagtgactc
     1021 ctgccgcggg cacagtgact gctgctgtgg gcactgtgac tcctgctgcc gtgggcacag
     1081 tgactgctgc tgtgggcaca gtgacttctg ccgcaggcac cataaacaca agtgatcctc
     1141 acgcaaggac tctgagtcct gccaaaagca cacccactaa cacatccagc aggaacccca
     1201 ttcccacctc aggtgcccaa acacaaggta ccaccatcca ggtgaccaca gaccagccag
     1261 tgcatagcac agcaggtaga ccaacaccta gtccctcaaa cactaccctg gagcccaaca
     1321 cccccaagtc tgtggcttcc acgtcctctg ccgtagtgac taccacccag gtacaaacca
     1381 aggagccgtc tgccagcacg gtgccagtgc ttcctaccag tatgagccct gaagtagaag
     1441 ccacatcccc caccacacag ccaagccctc tattacctac ccaggggaca ggtgggccag
     1501 gcatactctt gacaacagag caggtgggga ccaaagccac agctggtact gcatctgctg
     1561 ggccaacatc caggagctca ggggatgtta aggtgccaac cacagcctca tgccagctca
     1621 gcacccaagg ccagtaccta gtggtcacca ctgatcccct gaccccatcc ttggtgaaca
     1681 aaatgttcct cctggtggtg ctcattgttg gggtgaccct cttcatcgca gtcctgatga
     1741 tgtttgcctt gcaagcctat gagagctaca agaagaagga ctatacgcag gtggactacc
     1801 tgatcaatgg catgtacgcc gactcagaga tgtgaggact tctcaggagg ccagcctcct
     1861 ccttggcctt ctattttgcc tcagaccaaa ctaagtgctt ccagatcctt ctggtgcaat
     1921 ctcagagctg tgccagatgc ttagacacat ttaatcgctg tcagatcagc tccacgatca
     1981 tgagagagcc gccttttcgt atttattttt ctaaacgatc acatacgcag gagtggccag
     2041 agtggagggg gcctggcaca cttggccctc gatgtgtgga attttgacca gaattaaaag
     2101 caatgacctc tctccatcc
//
