LOCUS       XM_056984520            4172 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus similar to RIKEN cDNA 5830475I06
            (RGD1311744), mRNA.
ACCESSION   XM_056984520
VERSION     XM_056984520.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051343.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_056984520.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4172
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4172
                     /gene="RGD1311744"
                     /note="similar to RIKEN cDNA 5830475I06; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 2 mRNAs, 20 ESTs, 5 Proteins, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     140 samples with support for all annotated introns"
                     /db_xref="GeneID:300608"
                     /db_xref="RGD:1311744"
     CDS             252..2648
                     /gene="RGD1311744"
                     /codon_start=1
                     /product="von Willebrand factor A domain-containing
                     protein 5A"
                     /protein_id="XP_056840500.1"
                     /db_xref="GeneID:300608"
                     /db_xref="RGD:1311744"
                     /translation="MVSSSGLLTKVREPVVPKSIAVTLSINDFVAGVSATLNYKNEEK
                     TPLETFFVFPMDEDSAVYSFEACVDGKKIVAELEDKYQPHKRYEEAFSGGFQPYLLEE
                     DKCSRDVFCCNVGNLQPGSKVSLTLRYVQELPLEDDGALRYVLPAILNPRYHLSDQCV
                     DSCLDMKTPIVPLEELPYTLSMVANISSKLGISTIQSNCPLNPIEYTGDNKTSAQVSL
                     ADGHKFDRDVELLIFYRKVHSPSVAVEMGMPEKPSDSLMGAPSAMVSFYPDIPEVETT
                     TKCGEFVFLMDCSKSMNNPMSSKNKSQLRIDAAKETLILLLKSLPMGCYFNIYGFGAT
                     HEEFFPISVKYSQETMEMAVAKVKLLLADLGGTELLTPLRKIVRKPPIPGHPLQIFVF
                     TDGEIVESFSVIREVKFRSRKYRCFTFGIGEGASTSLIKSLALLSGGTAEFITGNDRM
                     QSKALRSLRRSLQSVVEDVTLSWNLPPEMFAPVLAPEQTSIFRGQKIIIYSLFIGKIP
                     QEEATGEVCLSYKLHGKSYEEKMTFSLQPKSDDNFTIHRLAAKSMIQSKDFGFKETAA
                     MYRRDVLDISLDSGIISSFTAFVAINKELNEPIQGPLLHRDILRPILMDGRNRRTSDA
                     YSKIVFCPSVVPVNHLPKWLRKKHHPNGTPQEPQKCYRVKCVIPTDTRPELSHLAKYD
                     SSPQGNKEHSIAQLINLQNADGSWDMNEDLVKILGTSLEDMTAARPSEVLEPSAWATM
                     LAVLWLHENGKELKEEWELLERKAVVWLHKNAVEGFTKAMDTANKFLKTSLSPSIFNL
                     "
ORIGIN      
        1 agcttctagt tcccatcagc caaaggcagg ggagtggcca gctgtttctt cacactcccg
       61 ccctcttctc tgcagttgct ctgcccagag ggtccacgcc agagcgcatc ccgcccagca
      121 tagaagccct tccacgtcca ccaccagcaa caacaacagc ctcctgcagt ggccactgcc
      181 agcctgagct ctcggctgcc agacagcgtg tatcttttca gctgttggtg ctcaggaacc
      241 acagtgtcaa catggtgagt tcgagtggct tactcactaa agtaagagag ccagtggtgc
      301 cgaagagcat tgccgtgact ctgtccatca atgattttgt ggctggtgtg tctgcaaccc
      361 taaactataa gaatgaagag aaaaccccct tagagacctt ctttgtgttc cccatggatg
      421 aagattctgc tgtctacagc tttgaggcct gtgtggatgg aaagaaaatt gtggcagagt
      481 tggaggacaa gtatcagccc cacaaaaggt atgaagaggc tttctctggg ggatttcagc
      541 cttacttatt ggaagaagac aagtgttcca gggatgtctt ctgttgtaat gtggggaacc
      601 tgcagccagg gtcaaaagtg tcactgacac tgagatatgt gcaagaactt cccttggaag
      661 atgatggggc cctgcgctat gtgctcccag ccatcctgaa tcctagatac catctctctg
      721 atcaatgtgt ggacagttgc ctggatatga agaccccgat agttcccttg gaagaattgc
      781 cctacacact cagcatggtt gccaacatca gctccaagct tggtatcagt acaatccaat
      841 ccaactgtcc cttgaatccc attgagtaca ctggagataa caagacctca gctcaggttt
      901 ccttggctga cggacacaag tttgaccgag atgtggaact ccttattttc tatagaaagg
      961 tgcacagccc cagtgtagct gtggagatgg gaatgcctga aaagccatca gatagtttaa
     1021 tgggagcacc ttctgcaatg gtgagtttct acccagatat cccagaagtg gagaccacaa
     1081 caaaatgtgg agaatttgtg ttccttatgg actgttcaaa aagcatgaat aaccccatga
     1141 gttccaagaa caagtctcag ctgagaatag atgctgccaa ggaaacactg attctgctac
     1201 tgaagagttt gcccatgggc tgctatttca acatctatgg atttggagcc acccatgagg
     1261 agttctttcc aatcagtgtg aagtattctc aggaaaccat ggagatggca gtggcaaaag
     1321 taaagctttt gctcgctgat ctaggaggga ctgaactttt aacaccacta cggaaaattg
     1381 tgaggaaacc cccaatccca gggcatccct tacagatctt tgtcttcaca gatggagaaa
     1441 ttgttgaaag ttttagtgta atcagagaag ttaagttccg gagcagaaaa tacagatgtt
     1501 tcacctttgg cattggagaa ggagcctcca ctagtttaat caaaagcctt gccctgttgt
     1561 cagggggcac tgcagagttt atcacaggca atgacaggat gcagtccaag gcccttagat
     1621 ccctgaggcg ttctctacag tctgtagtag aggatgtcac tctgagctgg aatttgcctc
     1681 cggaaatgtt tgcacctgtg ctagctccag aacaaacttc tatctttcgg ggtcaaaaga
     1741 taatcatcta cagcttattt attggaaaaa taccacaaga agaggcaact ggtgaagtgt
     1801 gtctctcata taagcttcat ggcaaaagtt atgaagaaaa aatgacattt tctctacagc
     1861 caaagtctga tgacaacttc accattcatc gtcttgctgc aaagtccatg attcagtcca
     1921 aagactttgg cttcaaggag acagcagcaa tgtatagaag agatgtgttg gacatcagcc
     1981 tagactctgg aatcataagc tccttcacag cctttgttgc catcaacaag gagctcaatg
     2041 agccaatcca ggggcccctg cttcataggg atattctaag gccaattctc atggatggac
     2101 gtaatagaag gacctctgat gcttacagca aaattgtatt ttgccccagt gttgttcctg
     2161 taaatcatct tccaaagtgg ttgcgcaaaa aacaccatcc aaatggcaca ccgcaagagc
     2221 ctcagaagtg ctatcgggtg aaatgtgtga ttcctacaga tactcgccct gagttgtccc
     2281 acctggctaa atatgacagt tccccacaag ggaataaaga gcatagtatt gcacagctga
     2341 taaatctcca gaatgcagat ggctcctggg atatgaatga agatttagtt aagattctag
     2401 gtactagttt ggaagacatg acggctgcac gccctagtga ggtattagaa ccttcggctt
     2461 gggctacaat gctagctgtg ctttggctac atgagaatgg caaggaattg aaggaggagt
     2521 gggagcttct ggaaagaaag gctgtggttt ggcttcacaa aaatgcagtc gaaggtttca
     2581 ccaaggccat ggatactgcc aacaagttct tgaagacatc attgagtccc tccatcttca
     2641 atttatgaga gtggtgcctg ggagaagggc attctttcct gcctcctatc acatccttca
     2701 ccttgtccgt taagatagat ttgtgtcttg ggtaccttac gacctgtatc atactataaa
     2761 agtaaaggat gagcacatgg ctttggctat ctattgtagg tcccactggt tacaaccttg
     2821 ggtgtctgtg tatcccctaa gacaagtgct ggtagatata gaaactgttt cctatcttcg
     2881 agtagtatag aacatttgca tgtagtgatg tttctcctaa gtttcaaaaa catatttcac
     2941 tccagtctaa ggactaagaa tccctgcatc aaataattgt cttcattgtc cttttggtac
     3001 acacctttca ttttatatgc ttgtcattat atacattaca ttctcagata caatttgaat
     3061 gtttccattc ttggaggaag ttggatataa actgaaagcc aacttcagag tcaacgtaac
     3121 ttcaagatca cagagaatca aggtttcatt ttgttcactg cttctgttgg gaacattctt
     3181 ggtgtactct atgtggccac tgtcagtcta tactccatac ttttttcttt ctcctgccta
     3241 aatgatttga tatgagtcat acctatcaac agatgtctgt ccttaaccat taatcattct
     3301 gtaggaggtt aataatgagt tgtttagacc tagcattaat ccattaagcc catgagtttg
     3361 gttatggcct ggtttactca gaattaatgt aagttttgct gagagttgag tatgtttcgt
     3421 ttttcgtccc ataaagaatc aggttcccaa atcactctga ccattgcttt tcacataccc
     3481 tatcatatta aatgatccca ttcctccaga ttgctgttat accaatatta aaattaatat
     3541 tctactatga ctttgtgttg gtctttgtgt cagttgagtc aatgaacata agttatgttt
     3601 tattgtccca ttttcagccc caaaactatg gatatgtcca tcgataacac catatttatt
     3661 gatacgatac tgaaagcggg gcatggtttg tgccttcagt cagatttgac tacctatctc
     3721 caaaaagcct atttataaag ctaagttaat ggtacaaaat agaatacaaa atgtattcaa
     3781 tatagttact ctgggaagag gaacagagag acccaaagct tctccaagtt cagctagccc
     3841 aacacttccc caatctgatt tttccaagtc catcatctta aggatactaa agagggatta
     3901 aaattgtaac aaagggccaa gcagatatac ccatatgtat atagatacat atatagatat
     3961 agcataggtt ttctaggtca gttcccattt agggtggggt ggggtgtcta ttgctcatta
     4021 atccaacatt cagattggga gacatcaatg tctctttaga aaaaagaaag aaaaatatct
     4081 tcatttctgc cagtccagct ccactgtcac aatatcctct gttggtaggc tatctctttt
     4141 tttgtattta aataaacttg attgtaaatg tg
//
