LOCUS       NM_001106623            2234 bp    mRNA    linear   ROD 16-JUN-2024
DEFINITION  Rattus norvegicus FERRY endosomal RAB5 effector complex subunit 3
            (Ferry3), mRNA.
ACCESSION   NM_001106623 XM_001064550 XM_238378
VERSION     NM_001106623.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2234)
  AUTHORS   Mazuc,E., Guglielmi,L., Bec,N., Parez,V., Hahn,C.S., Mollevi,C.,
            Parrinello,H., Desvignes,J.P., Larroque,C., Jupp,R., Dariavach,P.
            and Martineau,P.
  TITLE     In-cell intrabody selection from a diverse human library identifies
            C12orf4 protein as a new player in rodent mast cell degranulation
  JOURNAL   PLoS One 9 (8), e104998 (2014)
   PUBMED   25122211
  REMARK    Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CH473964.2.
            
            On or before Oct 4, 2007 this sequence version replaced
            XM_238378.4, XM_001064550.1.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMD00132274,
                              SAMD00132291 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..2234
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /map="4q42"
     gene            1..2234
                     /gene="Ferry3"
                     /gene_synonym="C4h12orf4; chromosome 12 open reading frame
                     4; RGD1311164"
                     /note="FERRY endosomal RAB5 effector complex subunit 3"
                     /db_xref="GeneID:297607"
                     /db_xref="RGD:1311164"
     exon            1..62
                     /gene="Ferry3"
                     /gene_synonym="C4h12orf4; chromosome 12 open reading frame
                     4; RGD1311164"
                     /inference="alignment:Splign:2.1.0"
     exon            63..257
                     /gene="Ferry3"
                     /gene_synonym="C4h12orf4; chromosome 12 open reading frame
                     4; RGD1311164"
                     /inference="alignment:Splign:2.1.0"
     CDS             80..1738
                     /gene="Ferry3"
                     /gene_synonym="C4h12orf4; chromosome 12 open reading frame
                     4; RGD1311164"
                     /note="protein C12orf4 homolog; uncharacterized protein
                     C12orf4 homolog"
                     /codon_start=1
                     /product="FERRY endosomal RAB5 effector complex subunit 3"
                     /protein_id="NP_001100093.1"
                     /db_xref="GeneID:297607"
                     /db_xref="RGD:1311164"
                     /translation="MKKNRERFSSKEREFVYKFQIGSERLELRVPLRFPVDENASHLH
                     GRLMLLHSLPCFIENDLKEALARFIEEESLRDHDSDAEACLEAVKSGEVDLHQLASTW
                     AKAYAETTLEHARPEEPNWDEDFADVYHDLIHSPASETLLNLEHNYFVSISELIGERD
                     VELKKLRERQGIEMEKVMQELGKSLTDQDVNSLAAQHFESQQDLENKWSNELKQSTAI
                     QKQEYQEWVIKLHQDLKNPNNSSLSEEIKVQPSQFRESADAAGRIYEEQRKLEESFTI
                     HLGAQLKTMHNLRLLRADMLDFCKHKRTQGSGVKLHRLQTALSLYSTSLCGLVLLVDN
                     RINSYSGIKRDFATVCQECTDFHFPRIEEQLEVVQQVALYARTQRRSKCKEARDSGNQ
                     NGGSDEKSKNAERNYLNILPGEFYITRHSNLSEIHVAFHLCVDDNVKSGNITARDPAI
                     MGLRNILKVCCTHDITTISIPLLLVHDMSEEMTIPWCLRRAELVFKCVKGFMMEMASW
                     DGGISRTVQFLVPQSISEEMFYQLSNMLPQIFRVSSTLTLTSKH"
     exon            258..403
                     /gene="Ferry3"
                     /gene_synonym="C4h12orf4; chromosome 12 open reading frame
                     4; RGD1311164"
                     /inference="alignment:Splign:2.1.0"
     exon            404..585
                     /gene="Ferry3"
                     /gene_synonym="C4h12orf4; chromosome 12 open reading frame
                     4; RGD1311164"
                     /inference="alignment:Splign:2.1.0"
     exon            586..685
                     /gene="Ferry3"
                     /gene_synonym="C4h12orf4; chromosome 12 open reading frame
                     4; RGD1311164"
                     /inference="alignment:Splign:2.1.0"
     exon            686..807
                     /gene="Ferry3"
                     /gene_synonym="C4h12orf4; chromosome 12 open reading frame
                     4; RGD1311164"
                     /inference="alignment:Splign:2.1.0"
     exon            808..914
                     /gene="Ferry3"
                     /gene_synonym="C4h12orf4; chromosome 12 open reading frame
                     4; RGD1311164"
                     /inference="alignment:Splign:2.1.0"
     exon            915..1112
                     /gene="Ferry3"
                     /gene_synonym="C4h12orf4; chromosome 12 open reading frame
                     4; RGD1311164"
                     /inference="alignment:Splign:2.1.0"
     exon            1113..1241
                     /gene="Ferry3"
                     /gene_synonym="C4h12orf4; chromosome 12 open reading frame
                     4; RGD1311164"
                     /inference="alignment:Splign:2.1.0"
     exon            1242..1316
                     /gene="Ferry3"
                     /gene_synonym="C4h12orf4; chromosome 12 open reading frame
                     4; RGD1311164"
                     /inference="alignment:Splign:2.1.0"
     exon            1317..1519
                     /gene="Ferry3"
                     /gene_synonym="C4h12orf4; chromosome 12 open reading frame
                     4; RGD1311164"
                     /inference="alignment:Splign:2.1.0"
     exon            1520..1577
                     /gene="Ferry3"
                     /gene_synonym="C4h12orf4; chromosome 12 open reading frame
                     4; RGD1311164"
                     /inference="alignment:Splign:2.1.0"
     exon            1578..1645
                     /gene="Ferry3"
                     /gene_synonym="C4h12orf4; chromosome 12 open reading frame
                     4; RGD1311164"
                     /inference="alignment:Splign:2.1.0"
     exon            1646..2234
                     /gene="Ferry3"
                     /gene_synonym="C4h12orf4; chromosome 12 open reading frame
                     4; RGD1311164"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ctgacttatt gggcagttct gcgttgacag ctctaagtgt gccttggtgt ttgagtgaag
       61 agaaatcctg ctgaacaaca tgaagaaaaa ccgagaaagg ttctccagca aggaaagaga
      121 attcgtgtac aaattccaga taggaagtga gcgcttagaa ctgagagtgc ccctcaggtt
      181 tcccgtggac gagaatgcca gtcatctgca tggacgtctg atgctgctgc acagtttgcc
      241 ctgcttcata gagaatgact taaaagaagc tctggcccgg tttatagaag aagagtccct
      301 cagagaccat gacagcgatg cagaagcatg cttggaggcg gttaagtctg gtgaggtaga
      361 tctacaccag ctggcgagta catgggccaa agcgtatgct gagacaaccc tagagcatgc
      421 gagacctgag gagcctaact gggatgaaga ctttgcagat gtgtaccatg acctaatcca
      481 ttctccggcc tctgagactc tcttaaatct ggaacacaat tactttgtta gcatctcaga
      541 attgattggc gaaagagatg tggagctgaa aaagttacga gagagacaag gcattgaaat
      601 ggaaaaggtg atgcaggaac tggggaagtc gctcacagat caagatgtga actcactggc
      661 tgcccagcac tttgaatccc agcaggactt agagaataaa tggtcaaacg aactgaaaca
      721 gtctacagct atccagaagc aagaatatca ggaatgggtg ataaagcttc atcaggacct
      781 aaaaaacccc aacaacagct ccctcagtga agaaattaaa gtgcagccga gtcagttcag
      841 ggaatctgcg gacgccgctg gaaggatcta tgaggagcag aggaagctgg aagaaagctt
      901 caccattcac ctgggagccc agttgaagac catgcacaat ctgcggttgc tgagggcaga
      961 catgctggac ttctgtaagc acaagagaac gcaggggagc ggcgtgaagc tccaccggct
     1021 ccagacggca ctgtcccttt actccacgtc cctctgtggc ctggttttac tagtagacaa
     1081 tcggattaat tcatatagcg gcatcaaaag agattttgcc acagtttgcc aagaatgcac
     1141 ggacttccac ttcccgcgga ttgaggagca actggaggtt gtccagcagg tggcgctgta
     1201 cgcacgaacc cagcgcagga gcaagtgcaa ggaggcacgc gattctggaa accaaaatgg
     1261 aggaagtgat gagaaatcta agaatgctga gagaaactat ttaaatattt taccaggaga
     1321 attttatatt acacgtcatt ctaatctctc ggaaatccac gttgctttcc atctctgtgt
     1381 ggatgacaac gtgaagtcag gaaacatcac tgctcgggat cccgctatta tgggactccg
     1441 aaatatactc aaggtttgct gtacccacga tatcacaacg ataagcatcc ctctcttgct
     1501 ggtgcatgat atgtcagagg aaatgactat accttggtgc ttaaggagag ctgaactggt
     1561 gtttaagtgt gtcaaaggtt tcatgatgga gatggcttca tgggatggag gaatttctcg
     1621 gacagtgcaa tttctggtac cacagagcat ttctgaagaa atgttttatc agctgagtaa
     1681 catgctccca cagatcttcc gggtctcctc aacactcact ctgacatcca agcactaaac
     1741 catacactga cacactgact gacagaagag gatttctgaa ctcctggaat cctgttgagc
     1801 ggaaggtgcc tggtgggccc tgagccccct gttaatgatg atgtacgtat ctaacattcc
     1861 aaaatgtgtc tgcttcacag accagaagca gctcccagtg agctcttact cagtcctttg
     1921 tggaataata gctcttcttt ctacctatat gtcctatcag gggatgatga tgctaacact
     1981 taaagtgttt ctcaaacacg gacacttgta tgccattgcg tttccatgga gacttctggt
     2041 ttttccaagg catgagttct gtattaggaa caggcataat cgggcatacg agtacaatct
     2101 tccttctact ttatctgtca aatcaaaatt taaatataca tttcagtgta agtttcttat
     2161 gaaaatgttt ttgtagttgg taaatatacc agacaaatgt gcatgttgtt ttaaattctc
     2221 ctgtttcaaa gcct
//
