LOCUS       NM_001008517            3433 bp    mRNA    linear   ROD 07-APR-2024
DEFINITION  Rattus norvegicus similar to human chromosome 2 open reading frame
            49 (C9h2orf49), mRNA.
ACCESSION   NM_001008517 XM_237114
VERSION     NM_001008517.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3433)
  AUTHORS   Popow,J., Jurkin,J., Schleiffer,A. and Martinez,J.
  TITLE     Analysis of orthologous groups reveals archease and DDX1 as tRNA
            splicing factors
  JOURNAL   Nature 511 (7507), 104-107 (2014)
   PUBMED   24870230
REFERENCE   2  (bases 1 to 3433)
  AUTHORS   Popow,J., Englert,M., Weitzer,S., Schleiffer,A., Mierzwa,B.,
            Mechtler,K., Trowitzsch,S., Will,C.L., Luhrmann,R., Soll,D. and
            Martinez,J.
  TITLE     HSPC117 is the essential subunit of a human tRNA splicing ligase
            complex
  JOURNAL   Science 331 (6018), 760-764 (2011)
   PUBMED   21311021
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JAXUCZ010000009.1.
            
            On Nov 27, 2020 this sequence version replaced NM_001008517.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC086514.1, SRR26360172.1563892.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-111               JAXUCZ010000009.1  52863565-52863675
            112-278             JAXUCZ010000009.1  52865472-52865638
            279-654             JAXUCZ010000009.1  52869347-52869722
            655-3433            JAXUCZ010000009.1  52871456-52874234
FEATURES             Location/Qualifiers
     source          1..3433
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="9"
                     /map="9q22"
     gene            1..3433
                     /gene="C9h2orf49"
                     /gene_synonym="RGD1310553"
                     /note="similar to human chromosome 2 open reading frame
                     49"
                     /db_xref="GeneID:301374"
                     /db_xref="RGD:1310553"
     exon            1..111
                     /gene="C9h2orf49"
                     /gene_synonym="RGD1310553"
                     /inference="alignment:Splign:2.1.0"
     CDS             13..711
                     /gene="C9h2orf49"
                     /gene_synonym="RGD1310553"
                     /codon_start=1
                     /product="ashwin"
                     /protein_id="NP_001008517.1"
                     /db_xref="GeneID:301374"
                     /db_xref="RGD:1310553"
                     /translation="MAGDVGGRSCTDAELLLHPELLSQEFLLLTLEQKNIAVENDVRV
                     NKDNLTDLYVQHAIPLPQRDLPKNRWGKMMEKKREHHEGKNDTKRGSAVDGLRKRPLI
                     VFDGSSTSTSIKVKKTENGADDRLKPPAQTGSTSDSLRKSPNSSSRIAPLVLYSSLPM
                     NNKMEHNNNDTKQNHDLTHRKSPSGPVKSPPLSPVGTTPVKLKRAAPKEEAEATNHLK
                     PPEAKRKIQHVTWP"
     exon            112..278
                     /gene="C9h2orf49"
                     /gene_synonym="RGD1310553"
                     /inference="alignment:Splign:2.1.0"
     exon            279..654
                     /gene="C9h2orf49"
                     /gene_synonym="RGD1310553"
                     /inference="alignment:Splign:2.1.0"
     exon            655..3433
                     /gene="C9h2orf49"
                     /gene_synonym="RGD1310553"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ctggcgacaa ccatggcggg ggatgtgggc ggtcgcagct gcacggacgc ggagctgctg
       61 ctgcaccctg agctgctgtc ccaggaattc ctcctcctca ccctggagca gaagaacata
      121 gctgttgaaa atgacgtaag agtaaacaaa gacaacctta ctgaccttta cgtccagcac
      181 gccattccgt tgcctcagag ggatttgcca aagaatcgat gggggaagat gatggagaag
      241 aaaagagagc accatgaagg gaaaaatgat accaaaaggg gtagtgctgt agatggatta
      301 aggaaaagac ccctcattgt gttcgatggg agctcaacaa gcacaagcat caaagtgaaa
      361 aagacagaga acggagcaga cgaccggctc aagcctcctg cccagacagg ctccaccagt
      421 gatagccttc ggaaatcacc aaattcctct tcgaggattg cacccctagt tttgtattcc
      481 agtttaccta tgaacaataa aatggagcac aataataatg acactaaaca gaaccatgac
      541 ttgacgcata ggaaaagtcc ttcgggtcca gtgaagtcac cgcctctctc ccctgttgga
      601 actactcctg tgaaattgaa acgggctgct cctaaggaag aggcagaggc cacaaatcac
      661 ctgaagccac cagaagcaaa gaggaagata cagcatgtta cgtggccatg aagggaagcc
      721 tcccagatgt aaatagagct gcagccgcag tttcagatga gtccacagta tttacagaga
      781 tcctgaacac tgaggggttt ccttgaggtt taaaataggt ttggaaaaat gagtcttttc
      841 cttctctccc tccctccatt tcttcccttc cttacaatgt cttgactttc atgtcccaat
      901 tagggaagaa atttcttttt aaaatacagc tttgtacaca tcctctgtaa aattcttttt
      961 ccaagcaaaa gcagttagca gttcacagta ttgtagtaaa tattgccacc tgcatcttga
     1021 agggttcgcc aagaacagtg tattgatggt gttgatggaa aagcgttctg ctcttcagtt
     1081 acgtgtgtca ctttgtccca tggaaagcaa aagggaagtc agggcttgcc atttctcctt
     1141 ctcagtggca aaagctgctt tgtctgtaga atgttcctgg cttacagggg ccctgtctat
     1201 tcttgtctta agcagcttga ggtctcactg tgagctcagc tatttcttgt atgaacttaa
     1261 gctttttaaa atgagactga ctttaatgtc ttcaggctgg gtgatcatgt tagaggctgt
     1321 actccatgtc agaaaacttg ggaatgatgg gtcctacaag tctagacaga agaaagtcca
     1381 gaacatgtgg cagtggtggg ggttgcttat cagtatgctg tggagtaggc agtcgtcact
     1441 gtcgggacac tgagttggga ttcactgtag agtgcagcag aaagtggact ccttactgaa
     1501 gagggtcatg tgctataata cagattcctg cagggatgtc ccgtgcaggg gtacgtggtg
     1561 gtctttttat ttttgtgcaa atagcattat ccacgtgtat aatgcaggca aatgagaaaa
     1621 tactgtttgc tttaaggtcg agatttctag tgtctgctta ttcctttata tttctaagag
     1681 caaaagatac ttcatacttt ttccatgtat aatcttcaaa ttgttggttt gtcttgttgg
     1741 tatgccatat ggtcatctcc tttctttgat ttgttaaaca gccattttag ttcatttatc
     1801 agaatagcct tacaaaaaat aattcagcct tgcaggtaag tactgttctt aggcatcaac
     1861 cctgtagttt ttaagcgttc tgctttcttc cccccagact aaatttgtac atgtaagaca
     1921 aagtttatga tactaagtgt tgcatgaact gttgattcta cagtaatttt ttaaatatat
     1981 tgttatctgc agggttgata agttaatatt gttggaagga actgtgctcc tatatgtaat
     2041 ggtcaaggta gattttaaaa gtgcagcttt tagagtagaa gaacacatta tattttatat
     2101 tcagttgacc tctctgcttc caccggtgtt tctctcttaa ggagagagtt taccgtttga
     2161 cagttttaag tcagtgggaa cttattttag ttactcagtg aaattaattt ttaatttgta
     2221 tgtttaactt acagagtagg ttggtaataa cagctgaact gtgtaacatt gttgcttcaa
     2281 attgaagttt atactatgac catccagcat ctgcgctcac atagcagcat attgttgagc
     2341 tgtcttgagt ttgagaggtg gaaaagcatt gacccatgca ctgtgtatta tgtagtgcct
     2401 ccatcacaga gcgccatgcc tcctgaaggg attgtagaac tggctccctc catgtgatga
     2461 cgaagcgtgc tgagagctgt gaatctgggg cagcagcttt gggagtgttg ttttgaagta
     2521 gtgtttgagt ttgggctcta aggactctat agggtagtgg acaagtctgg agtaagttta
     2581 cttagtagtg tatagggtta gtattgttgc tttggattct gtatcccagt gcaagctatt
     2641 attcctgggt cgggcaaatg aatggcatta gagacggtgg gatgctcctg aggtacagaa
     2701 ggcaccgcat ctaccattgg caagtccacc ttgttctttt tttcctattt tgtatatcct
     2761 ggtctctttc ccactcttct tcctctcttc tctaggtctg agcctcagac ttagatttgc
     2821 agatggcatt gtgtctatga ccttactcca ttcactgagg gtgaagatgg tctgacccca
     2881 aacctcctac atccgagggg gtcatagacc actgtgtgga tcctgcagtc tggagtcctg
     2941 tagcaccagg acactaaatt gcttcccaaa ggctgtcata gttttccaga gtagccttat
     3001 aatttaggca gctgccagac acttggaaga gtggctcgct actaccatag gctgtgtttg
     3061 ctggtattaa aattcttcaa aattgaaact tccatttgaa attgtgtttt gcttgactta
     3121 agtttgagag acagttctaa aactgatgta gagactcatt caacagcaat gaccttttac
     3181 aaacttacat taagtaaaac tgccagtaga ttaaatcatc cccatacgga agaactttct
     3241 ctacttacta ctgtggaatt tgagcattgt tgagaggcta caattggtcg acatgttttt
     3301 aagtgtgctt ttcttaaatg cttgtgtaag ttttgtaatt cagtatagaa aaggttgacc
     3361 ttgtaatgta catttttgta tgtatagtct tttaagtagc cttgtcctta tttaaataaa
     3421 ctgaataaaa cta
//
