LOCUS       XM_017592129            1583 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus similar to Complement C5 precursor
            (RGD1308742), transcript variant X12, mRNA.
ACCESSION   XM_017592129
VERSION     XM_017592129.2
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051338.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_017592129.3.
            
            On Jan 21, 2021 this sequence version replaced XM_017592129.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1583
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1583
                     /gene="RGD1308742"
                     /note="similar to Complement C5 precursor; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 2 Proteins, and 93% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:362120"
                     /db_xref="RGD:1308742"
     CDS             47..1066
                     /gene="RGD1308742"
                     /codon_start=1
                     /product="complement C5 isoform X9"
                     /protein_id="XP_017447618.2"
                     /db_xref="GeneID:362120"
                     /db_xref="RGD:1308742"
                     /translation="MVLVPFQALGFWGTLLFLIFLEPSWEQEQTRYIISTPIVFRVGA
                     PENVTVQAYGYTEAFDTTISVKSYPNKNVNYSSGTVELSPENKFQNSAILTIQAQELS
                     EEQNWFSNVYSEVVSKHFSKLEIMPIVYDNSSLFVHTDKPVYTPEQPVKVAVYSVDDD
                     LEPVTRTTVLTFIDPEGSEVGIIGGRNGTGIASFPDFKIPSNPKLGRWTIKANYREDA
                     STTGTTHFEVQGHEKAFKMAVMPTTDLQQKMEKQDKAHVTCHQTSDCLVQKINEQASK
                     YKHPVIKKCCYDGARYNEHETCVQRAAHVTIGPNCVKAFSLCCEIAHQMTFKHIHMSS
                     LHNRA"
ORIGIN      
        1 gttcacttta cttaaacgga aagtaacttc gaagaagtga catattatgg ttttggtacc
       61 gtttcaagcc ctgggctttt ggggaacact tctgtttttg atcttccttg agccaagttg
      121 ggaacaggaa caaaccagat atatcatttc aaccccaatt gtcttccgag ttggagctcc
      181 tgaaaatgtt acagtccaag cctatggcta caccgaggca tttgacacaa ccatctctgt
      241 gaaaagctat cctaataaaa atgttaatta ctcttcgggc actgttgaat tatcaccaga
      301 aaataaattc caaaactctg ctatcttaac aattcaggcc caagagttgt ctgaagaaca
      361 aaactggttc tcaaatgtgt attcggaagt cgtgtcaaag catttttcaa aattagaaat
      421 aatgccaatc gtctatgaca acagctctct ctttgttcac actgacaagc ctgtgtacac
      481 tccagaacag cctgtgaagg ttgccgtcta ctcagtggat gatgacctag agcctgtcac
      541 cagaacaaca gtcttgactt tcatagaccc cgaaggatcc gaagttggca taataggggg
      601 aagaaatggc acgggaattg cctcttttcc tgacttcaag atcccttcta atcctaaact
      661 tggtaggtgg actattaagg ctaactatag agaagacgct tcaacaactg gaactacaca
      721 ctttgaagtt caaggacatg agaaagcttt caaaatggct gtcatgccca caaccgatct
      781 gcaacagaag atggaaaagc aagataaagc acatgtcacg tgtcaccaga caagcgattg
      841 tttggtgcag aaaataaatg aacaagcttc taaatacaag catccagtga taaagaaatg
      901 ctgttacgat ggggccagat acaatgagca tgagacctgt gtgcagcgag ctgcccatgt
      961 gactataggc ccaaactgtg tcaaagcctt cagtctctgc tgtgaaatag cacaccagat
     1021 gacctttaag catatccaca tgtcaagtct ccacaacaga gcgtaattgt cctctgagtg
     1081 actccaccca gcagccaatg gaaagagagg cagagaccca cagccaaaca ttaggtggag
     1141 cttgaggagt cttatggaag aattgggaga agcactgagg gacctgaaga ggacagggac
     1201 tccacaggaa gaccaacaga gtcatctaac ctggaccctt gggggttccc agagcctgag
     1261 ccaccaacca aagaacaagc acgggctgga cctaggcccc cagcacatgt gtaacgtacg
     1321 aacagcttgg tctttatgcg ggtcccccaa caactaactg gagaagctgt ccctgaatct
     1381 gtcacctgtc tgcctgtgga tcctatcccc ctaaatggtc cgccttgtct ggcctcagtg
     1441 ggagaggatg cacctcgccc tgcaggactt gacgtgtgtg gggtaacacc cagagtgggg
     1501 atcctgcttc acaaaggaga aggggagggt ggaatggggg gaagactgca tgaggaggta
     1561 ctgggaggag aggaaggttg tgg
//
