LOCUS       NM_001419483            2067 bp    mRNA    linear   ROD 01-APR-2024
DEFINITION  Rattus norvegicus similar to human chromosome 7 open reading frame
            25 (C17h7orf25), transcript variant 2, mRNA.
ACCESSION   NM_001419483 XM_017600553
VERSION     NM_001419483.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2067)
  AUTHORS   Gerhard,D.S., Wagner,L., Feingold,E.A., Shenmen,C.M., Grouse,L.H.,
            Schuler,G., Klein,S.L., Old,S., Rasooly,R., Good,P., Guyer,M.,
            Peck,A.M., Derge,J.G., Lipman,D., Collins,F.S., Jang,W., Sherry,S.,
            Feolo,M., Misquitta,L., Lee,E., Rotmistrovsky,K., Greenhut,S.F.,
            Schaefer,C.F., Buetow,K., Bonner,T.I., Haussler,D., Kent,J.,
            Kiekhaus,M., Furey,T., Brent,M., Prange,C., Schreiber,K.,
            Shapiro,N., Bhat,N.K., Hopkins,R.F., Hsie,F., Driscoll,T.,
            Soares,M.B., Casavant,T.L., Scheetz,T.E., Brown-stein,M.J.,
            Usdin,T.B., Toshiyuki,S., Carninci,P., Piao,Y., Dudekula,D.B.,
            Ko,M.S., Kawakami,K., Suzuki,Y., Sugano,S., Gruber,C.E.,
            Smith,M.R., Simmons,B., Moore,T., Waterman,R., Johnson,S.L.,
            Ruan,Y., Wei,C.L., Mathavan,S., Gunaratne,P.H., Wu,J., Garcia,A.M.,
            Hulyk,S.W., Fuh,E., Yuan,Y., Sneed,A., Kowis,C., Hodgson,A.,
            Muzny,D.M., McPherson,J., Gibbs,R.A., Fahey,J., Helton,E.,
            Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M.,
            Madari,A., Young,A.C., Wetherby,K.D., Granite,S.J., Kwong,P.N.,
            Brinkley,C.P., Pearson,R.L., Bouffard,G.G., Blakesly,R.W.,
            Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J.,
            Myers,R.M., Butterfield,Y.S., Griffith,M., Griffith,O.L.,
            Krzywinski,M.I., Liao,N., Morin,R., Palmquist,D., Petrescu,A.S.,
            Skalska,U., Smailus,D.E., Stott,J.M., Schnerch,A., Schein,J.E.,
            Jones,S.J., Holt,R.A., Baross,A., Marra,M.A., Clifton,S.,
            Makowski,K.A., Bosak,S. and Malek,J.
  CONSRTM   MGC Project Team
  TITLE     The status, quality, and expansion of the NIH full-length cDNA
            project: the Mammalian Gene Collection (MGC)
  JOURNAL   Genome Res 14 (10B), 2121-2127 (2004)
   PUBMED   15489334
  REMARK    Erratum:[Genome Res. 2006 Jun;16(6):804. Morrin, Ryan [corrected to
            Morin, Ryan]]
REFERENCE   2  (bases 1 to 2067)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000017.1.
            
            On Apr 3, 2023 this sequence version replaced XM_017600553.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643429.52509.1,
                                           SRR26643298.69406.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN12840132 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-103               JAXUCZ010000017.1  55245297-55245399   c
            104-179             JAXUCZ010000017.1  55242303-55242378   c
            180-2067            JAXUCZ010000017.1  55238751-55240638   c
FEATURES             Location/Qualifiers
     source          1..2067
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="17"
                     /map="17q12.1"
     gene            1..2067
                     /gene="C17h7orf25"
                     /gene_synonym="RGD1308147"
                     /note="similar to human chromosome 7 open reading frame
                     25"
                     /db_xref="GeneID:307008"
                     /db_xref="RGD:1308147"
     exon            1..103
                     /gene="C17h7orf25"
                     /gene_synonym="RGD1308147"
                     /inference="alignment:Splign:2.1.0"
     exon            104..179
                     /gene="C17h7orf25"
                     /gene_synonym="RGD1308147"
                     /inference="alignment:Splign:2.1.0"
     exon            180..2067
                     /gene="C17h7orf25"
                     /gene_synonym="RGD1308147"
                     /inference="alignment:Splign:2.1.0"
     CDS             440..1705
                     /gene="C17h7orf25"
                     /gene_synonym="RGD1308147"
                     /codon_start=1
                     /product="UPF0415 protein C7orf25 homolog"
                     /protein_id="NP_001406412.1"
                     /db_xref="GeneID:307008"
                     /db_xref="RGD:1308147"
                     /translation="MSAYSMLSERIAMAKELIKRAESLSRSKKGGIEGGAKLCSKLKS
                     ELKFLQKIESGKVAIKESHLQSTNLTHLKAIVESAENLEEVVSVLRVFGYTDSLGEKQ
                     TLVVDVVANGGHTWVKAIGRKAEALHNIWLGRGQYGDKSIIEQAEDFLQASRQQPVQY
                     SNPHIVFAFYNSVSSPMADKLKDMGISVRGDIVAVNSLLNHPEEYLLSESESDDEGQE
                     LLQVTRVDLDNVLARVAFPTEIKVDVCRRVNLDITTLITYVSAMSYGGCHFIFKEKVL
                     TEQAEQERKERVLPQLEAFMKDKELFACESAVKDFQSILDTLGGPGERERAAVLIKRI
                     NVVPDQPSERALKLVASSKINSRSLTIFGTGDTLKAITMTANSGFVRAANNQGVKFSV
                     FIHQPRALTESKEALAVPLPKARTNDSAH"
ORIGIN      
        1 agagtacggc tcagcagaac aaggtgaggg ctggctcgag agctgtccct gcacactgcc
       61 tctgtgtccc ctcgccttgt gcgcaagggg tctggcgctg ctgatatgcc gtccttccac
      121 tcccatcaaa cttcatggtc tctcaaaaca acaaaaacaa agcacgcaga aaacacaggg
      181 acatgctgtg gattctgtag tctgaagagg taaaggtgta aacaagcgtc agaatccagc
      241 acacttcagg aagagctcaa ctgtacagca ttgtttagct gtcagaagga aggaaggctc
      301 tcccacaatc ccatacactg acgcccaggt tcatagtctt cataaacatt gtcgctagtg
      361 tggactttcg agtcatcatc ctaacagtaa cagacattga catttgcctt gtttttatga
      421 aaggaataat gctgtcagca tgtctgcata ctccatgctc tctgaaagaa ttgccatggc
      481 caaggaactg atcaaaagag cagaatcact ttctcggtca aaaaaaggtg gcatagaagg
      541 tggtgcgaag ctgtgcagca aactgaagtc agaactgaaa ttcttacaga aaatagagtc
      601 tgggaaggta gctattaagg agtcccattt acaaagcacg aatctaacac acttgaaagc
      661 cattgtggaa tcggcagaga acctggaaga agttgttagt gttcttcgtg tctttggtta
      721 cacagattcc ttgggagaaa aacagactct tgtggtggat gtcgtagcaa atggaggtca
      781 tacttgggtc aaagccattg gtcgaaaggc tgaagcactg cataacatct ggctaggcag
      841 gggccagtat ggcgacaaaa gcatcattga gcaggctgaa gatttcctcc aggccagtcg
      901 acagcaacca gtgcagtata gcaaccctca cattgttttt gcattttaca acagtgtctc
      961 cagccccatg gcagacaagc tgaaagatat gggcatatca gtaagaggag acatcgtcgc
     1021 ggtcaactct ctgttaaatc accccgaaga gtatctgctg agcgagagtg agtcagatga
     1081 cgagggccaa gaacttctgc aggtgacaag agtggaccta gacaatgtac tggcccgtgt
     1141 tgcctttcca acagagatca aggttgatgt gtgcagaaga gtaaatctgg acattactac
     1201 tttaatcaca tatgtgtctg ccatgagtta tggaggctgc cactttatct tcaaagaaaa
     1261 agtactcacg gagcaagcag agcaagagag gaaagagcgg gttctacctc agctggaagc
     1321 gtttatgaag gacaaggagt tgtttgcctg tgaatctgcc gtcaaggatt tccaatctat
     1381 tctagatacc ttagggggac caggagagag agagagagct gctgtactaa ttaaacgaat
     1441 caatgtggta ccagaccaac cttctgagcg tgccttgaaa ctagtggcga gttcaaaaat
     1501 taatagccgt tccttaacaa ttttcgggac aggagatacc ctgaaagcca tcacaatgac
     1561 tgcgaatagt ggttttgtca gagctgccaa caatcagggt gttaaattca gtgtgttcat
     1621 tcatcagcct agagcactta ctgagagtaa agaggcatta gccgttccct taccaaaagc
     1681 ccgaaccaat gatagtgcac actaatgcta tcctttaagt gttgtcatgg aaatatgtta
     1741 tttataccaa aggctggcct tcccatctat attgggagaa aaaagtttat agtaaacata
     1801 atatttagaa ctaaatagaa gttttttgtg tttcatctat ttaaggtcta taaattagaa
     1861 aaatccaaga gactgtctta tttatctgtg tattacatca cagactacat tgtagcaggt
     1921 aagaacagaa atacatctgc ataaggcttt tacttatctt gtgatgcatt tgtttgcctc
     1981 agtagggctt cagcctccac cacaggtaat cacatttcat ggaatatggc tacatgattc
     2041 tcaaattcat taaatatctg gagaaaa
//
