LOCUS       NM_001399718             836 bp    mRNA    linear   ROD 24-OCT-2024
DEFINITION  Rattus norvegicus BPTF associated chromatin complex component 1
            (Bacc1), transcript variant 2, mRNA.
ACCESSION   NM_001399718 XM_006246652
VERSION     NM_001399718.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 836)
  AUTHORS   Vermeulen,M., Eberl,H.C., Matarese,F., Marks,H., Denissov,S.,
            Butter,F., Lee,K.K., Olsen,J.V., Hyman,A.A., Stunnenberg,H.G. and
            Mann,M.
  TITLE     Quantitative interaction proteomics and genome-wide profiling of
            epigenetic histone marks and their readers
  JOURNAL   Cell 142 (6), 967-980 (2010)
   PUBMED   20850016
REFERENCE   2  (bases 1 to 836)
  AUTHORS   Dou,Y., Milne,T.A., Tackett,A.J., Smith,E.R., Fukuda,A.,
            Wysocka,J., Allis,C.D., Chait,B.T., Hess,J.L. and Roeder,R.G.
  TITLE     Physical association and coordinate function of the H3 K4
            methyltransferase MLL1 and the H4 K16 acetyltransferase MOF
  JOURNAL   Cell 121 (6), 873-885 (2005)
   PUBMED   15960975
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000010.1.
            
            On Jan 13, 2022 this sequence version replaced XM_006246652.4.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR22582419.587583.1,
                                           SRR26360176.2101728.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMN12840105,
                                           SAMN12840106 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-86                JAXUCZ010000010.1  55453226-55453311   c
            87-181              JAXUCZ010000010.1  55452973-55453067   c
            182-283             JAXUCZ010000010.1  55452322-55452423   c
            284-471             JAXUCZ010000010.1  55451463-55451650   c
            472-576             JAXUCZ010000010.1  55451135-55451239   c
            577-836             JAXUCZ010000010.1  55450648-55450907   c
FEATURES             Location/Qualifiers
     source          1..836
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /map="10q24"
     gene            1..836
                     /gene="Bacc1"
                     /gene_synonym="C10h17orf49; RGD1308134"
                     /note="BPTF associated chromatin complex component 1"
                     /db_xref="GeneID:287452"
                     /db_xref="RGD:1308134"
     exon            1..86
                     /gene="Bacc1"
                     /gene_synonym="C10h17orf49; RGD1308134"
                     /inference="alignment:Splign:2.1.0"
     CDS             66..641
                     /gene="Bacc1"
                     /gene_synonym="C10h17orf49; RGD1308134"
                     /note="isoform 2 is encoded by transcript variant 2;
                     chromatin complexes subunit BAP18"
                     /codon_start=1
                     /product="chromatin complexes subunit BAP18 isoform 2"
                     /protein_id="NP_001386647.1"
                     /db_xref="GeneID:287452"
                     /db_xref="RGD:1308134"
                     /translation="MTSASTKVGEIFSAAGAAFTKLGELTMQLHPVSDSSPAGAKWTE
                     TEIEMLRAAVKRFGDDLNHISCVIKERTVAQIKTTVKRKVYEDSGIPLPAESPKKGPK
                     KMTSGVLSPPNAPPPSSSSVPEAGGPPIKKQKADVTLSALNDSDANSDLVDVEGLGET
                     PPAKKLNFDQDSLTLDSGLLSTSADAPLLSC"
     exon            87..181
                     /gene="Bacc1"
                     /gene_synonym="C10h17orf49; RGD1308134"
                     /inference="alignment:Splign:2.1.0"
     exon            182..283
                     /gene="Bacc1"
                     /gene_synonym="C10h17orf49; RGD1308134"
                     /inference="alignment:Splign:2.1.0"
     exon            284..471
                     /gene="Bacc1"
                     /gene_synonym="C10h17orf49; RGD1308134"
                     /inference="alignment:Splign:2.1.0"
     exon            472..576
                     /gene="Bacc1"
                     /gene_synonym="C10h17orf49; RGD1308134"
                     /inference="alignment:Splign:2.1.0"
     exon            577..836
                     /gene="Bacc1"
                     /gene_synonym="C10h17orf49; RGD1308134"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ctccgtggtt tccagctcgc gtggtggtgg cggcggagcg tctccgtgag gaggtgcgcg
       61 gggccatgac gtcagcgtcc accaaggttg gagagatctt ttccgcggcc ggcgccgcct
      121 tcacgaagct cggggagttg acgatgcagc tgcatccagt atcggactct tcccctgccg
      181 gtgccaagtg gacggagacg gagatagaga tgctgagggc tgctgtgaag cgatttgggg
      241 acgatcttaa tcacatcagc tgtgtcatca aggaacggac agtggctcag ataaagacca
      301 ctgtgaagag aaaagtatac gaagactccg gtatccccct tccagctgag tcacccaaga
      361 aaggtcccaa gaagatgaca tccggtgtcc tctcacctcc aaacgcccct ccgcccagca
      421 gctccagtgt ccctgaagct gggggtcctc ccataaagaa acagaaggct gatgtgacac
      481 tcagtgctct gaacgactcc gacgccaaca gtgacctggt ggatgtcgaa gggctaggag
      541 aaactcctcc agccaagaaa ctcaactttg accaggacag cctgaccctg gactctggcc
      601 ttctctcgac ctctgctgat gctcctctac tctcctgctg agccttccac ctctgaccct
      661 cattgttcac cctggacctg tggatcgcct gggactctaa gcaaggactg cacgagagag
      721 ggtcagaggg ctgctggagc tacccgccct gttcctgata accacctcac cctttgactt
      781 ctgtctgatg gacgttttta tacagaaaat tataattaaa aataattctc tcagca
//
