LOCUS       NM_001109664            2658 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus similar to human chromosome 19 open reading frame
            47 (C1h19orf47), transcript variant 1, mRNA.
ACCESSION   NM_001109664 XM_001072428 XM_214832
VERSION     NM_001109664.2
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2658)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 2658)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000001.1.
            
            On Apr 3, 2023 this sequence version replaced NM_001109664.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643296.984.1,
                                           SRR26643292.1545.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            COMPLETENESS: full length.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-60                JAXUCZ010000001.1  91971952-91972011
            61-182              JAXUCZ010000001.1  91974560-91974681
            183-234             JAXUCZ010000001.1  91977226-91977277
            235-322             JAXUCZ010000001.1  91980089-91980176
            323-437             JAXUCZ010000001.1  91980261-91980375
            438-519             JAXUCZ010000001.1  91981359-91981440
            520-657             JAXUCZ010000001.1  91985985-91986122
            658-807             JAXUCZ010000001.1  91988315-91988464
            808-878             JAXUCZ010000001.1  91992636-91992706
            879-2658            JAXUCZ010000001.1  91994145-91995924
FEATURES             Location/Qualifiers
     source          1..2658
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q21"
     gene            1..2658
                     /gene="C1h19orf47"
                     /gene_synonym="RGD1307554"
                     /note="similar to human chromosome 19 open reading frame
                     47"
                     /db_xref="GeneID:292739"
                     /db_xref="RGD:1307554"
     exon            1..60
                     /gene="C1h19orf47"
                     /gene_synonym="RGD1307554"
                     /inference="alignment:Splign:2.1.0"
     exon            61..182
                     /gene="C1h19orf47"
                     /gene_synonym="RGD1307554"
                     /inference="alignment:Splign:2.1.0"
     CDS             138..1379
                     /gene="C1h19orf47"
                     /gene_synonym="RGD1307554"
                     /note="isoform 1 is encoded by transcript variant 1;
                     uncharacterized protein C19orf47 homolog"
                     /codon_start=1
                     /product="uncharacterized protein C19orf47 homolog isoform
                     1"
                     /protein_id="NP_001103134.1"
                     /db_xref="GeneID:292739"
                     /db_xref="RGD:1307554"
                     /translation="MGFRIRESLLLNLRKVPGSRVKARETMVSVTMATSEWIQFFKEA
                     GIPPGPAVNYAVMFVDNRIQKSMLLDLNKEIMNELGVTVVGDIIAILKHAKVVHRQDM
                     CKAATASVPCTPSPLQGELRRGASSAASRMIANSLNHDSPPHTPARRSDNSTSKISVT
                     VSNKVAVKNAKAAALAHREEESLVVPTKRRRVTAEMEGKYIIHMPKGTTPRTRKILEQ
                     QQAAKGLHRTSVFDRLGAETKADTTTGTKPTGVFSRLGATPEMDEELAWDSDNDSSSS
                     SVLQYAGVLKKLGRGPTKASPQPALTVKAKATSSATTLASTPKLRRLALPSRPGPEKK
                     PESLPKVSILKRLGKAAVVSEAQDSQVTSTKSKSSTEVKFAIKRTLVGPRGSSSSESL
                     GAQMDHAGTVSVFKRLGRRTF"
     exon            183..234
                     /gene="C1h19orf47"
                     /gene_synonym="RGD1307554"
                     /inference="alignment:Splign:2.1.0"
     exon            235..322
                     /gene="C1h19orf47"
                     /gene_synonym="RGD1307554"
                     /inference="alignment:Splign:2.1.0"
     exon            323..437
                     /gene="C1h19orf47"
                     /gene_synonym="RGD1307554"
                     /inference="alignment:Splign:2.1.0"
     exon            438..519
                     /gene="C1h19orf47"
                     /gene_synonym="RGD1307554"
                     /inference="alignment:Splign:2.1.0"
     exon            520..657
                     /gene="C1h19orf47"
                     /gene_synonym="RGD1307554"
                     /inference="alignment:Splign:2.1.0"
     exon            658..807
                     /gene="C1h19orf47"
                     /gene_synonym="RGD1307554"
                     /inference="alignment:Splign:2.1.0"
     exon            808..878
                     /gene="C1h19orf47"
                     /gene_synonym="RGD1307554"
                     /inference="alignment:Splign:2.1.0"
     exon            879..2658
                     /gene="C1h19orf47"
                     /gene_synonym="RGD1307554"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 agttggcgcg acccggaggg cgggcaggcg cctcgtgggg gtgcggaccc agagggccag
       61 ggtcatcgtg caaagccacc gagatgtgcg cattctcagt tcctgtcaca gagtaaacac
      121 tcctgaggac ctgccccatg ggcttcagaa tcagagagag cctgctttta aatctcagaa
      181 aggttccagg aagcagggtc aaggccaggg agacaatggt ctcagtgact atggccactt
      241 ctgagtggat ccagttcttc aaggaggccg gcattccccc gggacctgcc gtcaattatg
      301 ctgtgatgtt tgtggacaat cggatccaga agagcatgct gctagatctt aataaagaaa
      361 tcatgaatga gctgggtgtg accgtcgtgg gtgacatcat tgccatcctc aagcatgcca
      421 aggtggtgca ccggcaggac atgtgcaaag cggccactgc atcagtgcca tgcaccccca
      481 gccccctcca gggcgagctt cgccgtggcg cttctagtgc cgcttcgcga atgatcgcta
      541 acagcctgaa ccatgactct ccaccccaca ctcctgcaag gcggtcagac aacagcacct
      601 ccaagatctc agtcactgtg tccaacaagg tggcagtgaa gaatgccaag gctgctgctc
      661 tggcccacag ggaggaggaa agcctggttg ttcccaccaa gcggcggcgg gtcacagctg
      721 agatggaggg gaagtacatt atccacatgc ccaaggggac cactccccgc acccgaaaga
      781 tcctggagca gcagcaggca gcgaaaggtc tccacagaac atctgtgttt gatcgccttg
      841 gtgctgagac caaagcagac acgaccacag ggactaagcc cacaggagtt ttcagccgct
      901 taggggccac cccagagatg gatgaggagc tggcctggga cagtgacaat gacagcagca
      961 gtagctctgt cctgcagtat gctggggtcc tgaagaaact aggacgaggc ccaaccaagg
     1021 ccagtcccca gccagcactg actgtcaaag ccaaggccac aagctctgca accacactgg
     1081 cctccactcc aaagctgcgg cgcctggcac ttccttctcg ccctgggcca gagaagaagc
     1141 cagagtccct gcccaaagtc agcatcctta agagattggg caaggctgct gttgtgtccg
     1201 aggcacagga cagccaggtc acaagcacca agagtaagtc ctcaactgag gtcaagttcg
     1261 ccattaagag gactctggta gggccccggg ggagcagctc cagcgagagc cttggtgccc
     1321 agatggacca tgcgggcact gtgagcgtgt tcaaaagact gggccgaagg actttctagc
     1381 cacacgcagg gtggggtgca gcatggaatg gcgggccagc tcctgcttcc atcccttccg
     1441 gcctttcgtg agggctcacc tgccctccct ctgagctcta gatggcacaa ggcttggctt
     1501 tctccagcgt ttatgctggt tccaagcact cggggacaca ggcatttttc ttggtctttg
     1561 atattcctgt gacctgacct tgcctgctct gggacttccc ttcttccctg ccctctgtcc
     1621 tctgtgcagt aactatggcc ttggcatagt ccccttttct acctccttcc aaagccaagg
     1681 gccctgtttc tttcacattg tctacccctg atggcagcat ctgctgcctt aggccctcct
     1741 gttgtgactg ccccaccaca aaggtgtcac ctggagggac tcccttcagc ccaccctgtg
     1801 ccttccctcc ctcttctacc ccttccctgc ctgctatgct gtcactctcc ctctcttcac
     1861 tcttttcatt tctcttctgt tttctgtccc tgtggcaagg cccgaccgtc cgctgcatcg
     1921 tgcccgaccc tcctgcgcct ctggcctccc agcggccccc tcgtcgacgg tggcggcgaa
     1981 cctgtaaaga ctgttagctg ccttccaatc ccaggctgga gggactcccc cagaccctgg
     2041 cctgcagctg gggcacctcc atttccctgc cctggctgtc tttttctctg atgggtggtg
     2101 ggcagcagac attgggaagg tgaggtgctg aggacaaatg actgctgttt taatatattt
     2161 ttgtgacttt cagactgttt gcttccttcc cctccttcag tgggagtcac aggcttgttg
     2221 ttcacaccaa cacagtgggg ggtgggcact ggtaaagggc tgcgccccag caccaggtcc
     2281 tgagctgacg gggatgatca tgacagtcct ttggtgaagc catctcctcc cttacaagct
     2341 gcagtgcctg tcactatggc tttcccatca atgacactgt tctgccactc tgcctgttgg
     2401 tagcttgctt ttattttgag acaggatctc actatgtagc cctagcttcc ctggaacttg
     2461 ctatgtagat caggctggcc tcaactctga cgagaccctc ctgcctctgc ctcctgagct
     2521 cccaaatgct gggattaaag gctttcccgc catacccagc ttgctttttt catttcttgc
     2581 tttcttttta cttgctatat agttgaggaa gacttggaat gtctctcttt acaaataaat
     2641 ttattttgtg tgtataaa
//
